Gene : Seita.2G131700 S. italica v2.2
Defline:  (1 of 1) 1.3.1.70 - Delta(14)-sterol reductase / Sterol C14-reductase Genomic Order:  1317
Name:  ? Seita.2G131700 Secondary Identifier:  ? PAC:32722297
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2541 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G131700 0.5kb upstream 0.5kb upstream 5279 true scaffold_2: 15320180-15325458 Setaria italica
Seita.2G131700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 15320180-15320679 Setaria italica
Seita.2G131700 0.5kb downstream 0.5kb downstream 5279 true scaffold_2: 15320680-15325958 Setaria italica
Seita.2G131700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 15325459-15325958 Setaria italica
Seita.2G131700 1.0kb upstream 1.0kb upstream 5779 true scaffold_2: 15319680-15325458 Setaria italica
Seita.2G131700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 15319680-15320679 Setaria italica
Seita.2G131700 1.0kb downstream 1.0kb downstream 5779 true scaffold_2: 15320680-15326458 Setaria italica
Seita.2G131700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 15325459-15326458 Setaria italica
Seita.2G131700 2.0kb upstream 2.0kb upstream 6779 true scaffold_2: 15318680-15325458 Setaria italica
Seita.2G131700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 15318680-15320679 Setaria italica
Seita.2G131700 2.0kb downstream 2.0kb downstream 6779 true scaffold_2: 15320680-15327458 Setaria italica
Seita.2G131700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 15325459-15327458 Setaria italica
Seita.2G131700 5.0kb upstream 5.0kb upstream 9779 true scaffold_2: 15315680-15325458 Setaria italica
Seita.2G131700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 15315680-15320679 Setaria italica
Seita.2G131700 5.0kb downstream 5.0kb downstream 9779 true scaffold_2: 15320680-15330458 Setaria italica
Seita.2G131700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 15325459-15330458 Setaria italica
Seita.2G131700 10.0kb upstream 10.0kb upstream 14779 true scaffold_2: 15310680-15325458 Setaria italica
Seita.2G131700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 15310680-15320679 Setaria italica
Seita.2G131700 10.0kb downstream 10.0kb downstream 14779 true scaffold_2: 15320680-15335458 Setaria italica
Seita.2G131700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 15325459-15335458 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177679 5267 Panicoideae View MSA
124575320 5269 Grass View MSA
122044156 5273 Angiosperm View MSA
121351053 5274 Embryophyte View MSA
123426486 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.374        
cufflinks 8.601        
cufflinks 4.495       Low
cufflinks 5.161       Low
cufflinks 4.723       Low
cufflinks 8.587        
cufflinks 6.982        
cufflinks 7.378        
cufflinks 5.755        
cufflinks 13.509       High
cufflinks 8.374        
cufflinks 8.623        
cufflinks 9.436        
cufflinks 4.982       Low
cufflinks 10.083        
cufflinks 7.728        
cufflinks 12.412       High
cufflinks 8.396        
cufflinks 3.739       Low
cufflinks 10.863       High

0 Strain