Gene : Seita.2G132200 S. italica v2.2
Defline:  (1 of 2) PTHR22976 - BIOTIN SYNTHASE Genomic Order:  1322
Name:  ? Seita.2G132200 Secondary Identifier:  ? PAC:32722371
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1507 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G132200 0.5kb upstream 0.5kb upstream 5316 true scaffold_2: 15356447-15361762 Setaria italica
Seita.2G132200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 15356447-15356946 Setaria italica
Seita.2G132200 0.5kb downstream 0.5kb downstream 5316 true scaffold_2: 15356947-15362262 Setaria italica
Seita.2G132200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 15361763-15362262 Setaria italica
Seita.2G132200 1.0kb upstream 1.0kb upstream 5816 true scaffold_2: 15355947-15361762 Setaria italica
Seita.2G132200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 15355947-15356946 Setaria italica
Seita.2G132200 1.0kb downstream 1.0kb downstream 5816 true scaffold_2: 15356947-15362762 Setaria italica
Seita.2G132200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 15361763-15362762 Setaria italica
Seita.2G132200 2.0kb upstream 2.0kb upstream 6816 true scaffold_2: 15354947-15361762 Setaria italica
Seita.2G132200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 15354947-15356946 Setaria italica
Seita.2G132200 2.0kb downstream 2.0kb downstream 6816 true scaffold_2: 15356947-15363762 Setaria italica
Seita.2G132200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 15361763-15363762 Setaria italica
Seita.2G132200 5.0kb upstream 5.0kb upstream 9816 true scaffold_2: 15351947-15361762 Setaria italica
Seita.2G132200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 15351947-15356946 Setaria italica
Seita.2G132200 5.0kb downstream 5.0kb downstream 9816 true scaffold_2: 15356947-15366762 Setaria italica
Seita.2G132200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 15361763-15366762 Setaria italica
Seita.2G132200 10.0kb upstream 10.0kb upstream 14816 true scaffold_2: 15346947-15361762 Setaria italica
Seita.2G132200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 15346947-15356946 Setaria italica
Seita.2G132200 10.0kb downstream 10.0kb downstream 14816 true scaffold_2: 15356947-15371762 Setaria italica
Seita.2G132200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 15361763-15371762 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182372 5267 Panicoideae View MSA
124572083 5269 Grass View MSA
122044097 5273 Angiosperm View MSA
121346101 5274 Embryophyte View MSA
123424620 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.349        
cufflinks 8.406       High
cufflinks 3.291        
cufflinks 3.084       Low
cufflinks 2.48       Low
cufflinks 10.906       High
cufflinks 5.734        
cufflinks 7.054       High
cufflinks 7.307       High
cufflinks 4.383        
cufflinks 3.703        
cufflinks 4.225        
cufflinks 4.587        
cufflinks 3.716        
cufflinks 4.507        
cufflinks 4.761        
cufflinks 5.54        
cufflinks 3.916        
cufflinks 2.168       Low
cufflinks 5.302        

0 Strain