Gene : Seita.2G134900 S. italica v2.2
Defline:  (1 of 2) PTHR11203:SF5 - CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 Genomic Order:  1349
Name:  ? Seita.2G134900 Secondary Identifier:  ? PAC:32718175
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G134900 0.5kb upstream 0.5kb upstream 8575 true scaffold_2: 15525532-15534106 Setaria italica
Seita.2G134900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 15533607-15534106 Setaria italica
Seita.2G134900 0.5kb downstream 0.5kb downstream 8575 true scaffold_2: 15525032-15533606 Setaria italica
Seita.2G134900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 15525032-15525531 Setaria italica
Seita.2G134900 1.0kb upstream 1.0kb upstream 9075 true scaffold_2: 15525532-15534606 Setaria italica
Seita.2G134900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 15533607-15534606 Setaria italica
Seita.2G134900 1.0kb downstream 1.0kb downstream 9075 true scaffold_2: 15524532-15533606 Setaria italica
Seita.2G134900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 15524532-15525531 Setaria italica
Seita.2G134900 2.0kb upstream 2.0kb upstream 10075 true scaffold_2: 15525532-15535606 Setaria italica
Seita.2G134900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 15533607-15535606 Setaria italica
Seita.2G134900 2.0kb downstream 2.0kb downstream 10075 true scaffold_2: 15523532-15533606 Setaria italica
Seita.2G134900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 15523532-15525531 Setaria italica
Seita.2G134900 5.0kb upstream 5.0kb upstream 13075 true scaffold_2: 15525532-15538606 Setaria italica
Seita.2G134900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 15533607-15538606 Setaria italica
Seita.2G134900 5.0kb downstream 5.0kb downstream 13075 true scaffold_2: 15520532-15533606 Setaria italica
Seita.2G134900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 15520532-15525531 Setaria italica
Seita.2G134900 10.0kb upstream 10.0kb upstream 18075 true scaffold_2: 15525532-15543606 Setaria italica
Seita.2G134900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 15533607-15543606 Setaria italica
Seita.2G134900 10.0kb downstream 10.0kb downstream 18075 true scaffold_2: 15515532-15533606 Setaria italica
Seita.2G134900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 15515532-15525531 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188683 5267 Panicoideae View MSA
124571506 5269 Grass View MSA
122046415 5273 Angiosperm View MSA
121346167 5274 Embryophyte View MSA
123425250 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.73        
cufflinks 8.306       High
cufflinks 3.1        
cufflinks 2.296       Low
cufflinks 2.275       Low
cufflinks 7.106       High
cufflinks 4.681        
cufflinks 4.284        
cufflinks 4.38        
cufflinks 3.363        
cufflinks 4.394        
cufflinks 3.632        
cufflinks 2.904        
cufflinks 3.798        
cufflinks 4.691        
cufflinks 3.561        
cufflinks 4.518        
cufflinks 2.778        
cufflinks 1.51       Low
cufflinks 4.99        

0 Strain