Gene : Seita.2G143900 S. italica v2.2
Defline:  (1 of 3) PTHR13691:SF5 - 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL Genomic Order:  1439
Name:  ? Seita.2G143900 Secondary Identifier:  ? PAC:32720228
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G143900 0.5kb upstream 0.5kb upstream 2954 true scaffold_2: 17217671-17220624 Setaria italica
Seita.2G143900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 17220125-17220624 Setaria italica
Seita.2G143900 0.5kb downstream 0.5kb downstream 2954 true scaffold_2: 17217171-17220124 Setaria italica
Seita.2G143900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 17217171-17217670 Setaria italica
Seita.2G143900 1.0kb upstream 1.0kb upstream 3454 true scaffold_2: 17217671-17221124 Setaria italica
Seita.2G143900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 17220125-17221124 Setaria italica
Seita.2G143900 1.0kb downstream 1.0kb downstream 3454 true scaffold_2: 17216671-17220124 Setaria italica
Seita.2G143900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 17216671-17217670 Setaria italica
Seita.2G143900 2.0kb upstream 2.0kb upstream 4454 true scaffold_2: 17217671-17222124 Setaria italica
Seita.2G143900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 17220125-17222124 Setaria italica
Seita.2G143900 2.0kb downstream 2.0kb downstream 4454 true scaffold_2: 17215671-17220124 Setaria italica
Seita.2G143900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 17215671-17217670 Setaria italica
Seita.2G143900 5.0kb upstream 5.0kb upstream 7454 true scaffold_2: 17217671-17225124 Setaria italica
Seita.2G143900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 17220125-17225124 Setaria italica
Seita.2G143900 5.0kb downstream 5.0kb downstream 7454 true scaffold_2: 17212671-17220124 Setaria italica
Seita.2G143900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 17212671-17217670 Setaria italica
Seita.2G143900 10.0kb upstream 10.0kb upstream 12454 true scaffold_2: 17217671-17230124 Setaria italica
Seita.2G143900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 17220125-17230124 Setaria italica
Seita.2G143900 10.0kb downstream 10.0kb downstream 12454 true scaffold_2: 17207671-17220124 Setaria italica
Seita.2G143900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 17207671-17217670 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175091 5267 Panicoideae View MSA
124465305 5269 Grass View MSA
122051370 5273 Angiosperm View MSA
123428909 5275 Viridiplantae View MSA
121312449 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.52     High High
cufflinks 18.971     High  
cufflinks 10.634       Low
cufflinks 8.765       Low
cufflinks 13.931     High  
cufflinks 18.804     High  
cufflinks 16.292     High  
cufflinks 15.103     High  
cufflinks 21.981     High  
cufflinks 20.38     High  
cufflinks 23.051     High High
cufflinks 18.223     High  
cufflinks 17.599     High  
cufflinks 12.951        
cufflinks 18.696     High  
cufflinks 16.192     High  
cufflinks 19.606     High  
cufflinks 17.561     High  
cufflinks 11.079       Low
cufflinks 20.629     High  

0 Strain