Gene : Seita.2G145100 S. italica v2.2
Defline:  (1 of 7) PF02845 - CUE domain Genomic Order:  1451
Name:  ? Seita.2G145100 Secondary Identifier:  ? PAC:32720764
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G145100 0.5kb upstream 0.5kb upstream 5672 true scaffold_2: 17355403-17361074 Setaria italica
Seita.2G145100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 17355403-17355902 Setaria italica
Seita.2G145100 0.5kb downstream 0.5kb downstream 5672 true scaffold_2: 17355903-17361574 Setaria italica
Seita.2G145100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 17361075-17361574 Setaria italica
Seita.2G145100 1.0kb upstream 1.0kb upstream 6172 true scaffold_2: 17354903-17361074 Setaria italica
Seita.2G145100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 17354903-17355902 Setaria italica
Seita.2G145100 1.0kb downstream 1.0kb downstream 6172 true scaffold_2: 17355903-17362074 Setaria italica
Seita.2G145100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 17361075-17362074 Setaria italica
Seita.2G145100 2.0kb upstream 2.0kb upstream 7172 true scaffold_2: 17353903-17361074 Setaria italica
Seita.2G145100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 17353903-17355902 Setaria italica
Seita.2G145100 2.0kb downstream 2.0kb downstream 7172 true scaffold_2: 17355903-17363074 Setaria italica
Seita.2G145100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 17361075-17363074 Setaria italica
Seita.2G145100 5.0kb upstream 5.0kb upstream 10172 true scaffold_2: 17350903-17361074 Setaria italica
Seita.2G145100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 17350903-17355902 Setaria italica
Seita.2G145100 5.0kb downstream 5.0kb downstream 10172 true scaffold_2: 17355903-17366074 Setaria italica
Seita.2G145100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 17361075-17366074 Setaria italica
Seita.2G145100 10.0kb upstream 10.0kb upstream 15172 true scaffold_2: 17345903-17361074 Setaria italica
Seita.2G145100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 17345903-17355902 Setaria italica
Seita.2G145100 10.0kb downstream 10.0kb downstream 15172 true scaffold_2: 17355903-17371074 Setaria italica
Seita.2G145100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 17361075-17371074 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116239 5267 Panicoideae View MSA
124583138 5269 Grass View MSA
122042927 5273 Angiosperm View MSA
121343800 5274 Embryophyte View MSA
123427997 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.949        
cufflinks 3.44        
cufflinks 2.702       Low
cufflinks 2.832       Low
cufflinks 2.628       Low
cufflinks 4.195       High
cufflinks 2.985        
cufflinks 3.992       High
cufflinks 3.546        
cufflinks 3.818        
cufflinks 3.027        
cufflinks 3.883        
cufflinks 3.529        
cufflinks 2.896       Low
cufflinks 3.514        
cufflinks 3.989       High
cufflinks 4.1       High
cufflinks 3.885        
cufflinks 2.878       Low
cufflinks 3.139        

0 Strain