Gene : Seita.2G148000 S. italica v2.2
Defline:  (1 of 3) PTHR22891:SF35 - PROTEIN ARGONAUTE 6 Genomic Order:  1480
Name:  ? Seita.2G148000 Secondary Identifier:  ? PAC:32720916
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G148000 0.5kb upstream 0.5kb upstream 11297 true scaffold_2: 19353720-19365016 Setaria italica
Seita.2G148000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 19353720-19354219 Setaria italica
Seita.2G148000 0.5kb downstream 0.5kb downstream 11297 true scaffold_2: 19354220-19365516 Setaria italica
Seita.2G148000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 19365017-19365516 Setaria italica
Seita.2G148000 1.0kb upstream 1.0kb upstream 11797 true scaffold_2: 19353220-19365016 Setaria italica
Seita.2G148000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 19353220-19354219 Setaria italica
Seita.2G148000 1.0kb downstream 1.0kb downstream 11797 true scaffold_2: 19354220-19366016 Setaria italica
Seita.2G148000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 19365017-19366016 Setaria italica
Seita.2G148000 2.0kb upstream 2.0kb upstream 12797 true scaffold_2: 19352220-19365016 Setaria italica
Seita.2G148000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 19352220-19354219 Setaria italica
Seita.2G148000 2.0kb downstream 2.0kb downstream 12797 true scaffold_2: 19354220-19367016 Setaria italica
Seita.2G148000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 19365017-19367016 Setaria italica
Seita.2G148000 5.0kb upstream 5.0kb upstream 15797 true scaffold_2: 19349220-19365016 Setaria italica
Seita.2G148000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 19349220-19354219 Setaria italica
Seita.2G148000 5.0kb downstream 5.0kb downstream 15797 true scaffold_2: 19354220-19370016 Setaria italica
Seita.2G148000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 19365017-19370016 Setaria italica
Seita.2G148000 10.0kb upstream 10.0kb upstream 20797 true scaffold_2: 19344220-19365016 Setaria italica
Seita.2G148000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 19344220-19354219 Setaria italica
Seita.2G148000 10.0kb downstream 10.0kb downstream 20797 true scaffold_2: 19354220-19375016 Setaria italica
Seita.2G148000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 19365017-19375016 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027856 5273 Angiosperm View MSA
122184790 5267 Panicoideae View MSA
124585390 5269 Grass View MSA
121349761 5274 Embryophyte View MSA
123381432 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.505        
cufflinks 3.154       High
cufflinks 0.151       Low
cufflinks 0.102       Low
cufflinks 0.255        
cufflinks 3.476       High
cufflinks 1.004        
cufflinks 1.706        
cufflinks 1.9        
cufflinks 0.776        
cufflinks 1.496        
cufflinks 1.014        
cufflinks 0.796        
cufflinks 0.226        
cufflinks 1.257        
cufflinks 0.481        
cufflinks 1.211        
cufflinks 0.243        
cufflinks 0.065     Low Low
cufflinks 1.089        

0 Strain