Gene : Seita.2G146800 S. italica v2.2
Defline:  (1 of 3) PF13975 - gag-polyprotein putative aspartyl protease (gag-asp_proteas) Genomic Order:  1468
Name:  ? Seita.2G146800 Secondary Identifier:  ? PAC:32720142
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G146800 0.5kb upstream 0.5kb upstream 3063 true scaffold_2: 18528723-18531785 Setaria italica
Seita.2G146800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 18528723-18529222 Setaria italica
Seita.2G146800 0.5kb downstream 0.5kb downstream 3063 true scaffold_2: 18529223-18532285 Setaria italica
Seita.2G146800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 18531786-18532285 Setaria italica
Seita.2G146800 1.0kb upstream 1.0kb upstream 3563 true scaffold_2: 18528223-18531785 Setaria italica
Seita.2G146800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 18528223-18529222 Setaria italica
Seita.2G146800 1.0kb downstream 1.0kb downstream 3563 true scaffold_2: 18529223-18532785 Setaria italica
Seita.2G146800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 18531786-18532785 Setaria italica
Seita.2G146800 2.0kb upstream 2.0kb upstream 4563 true scaffold_2: 18527223-18531785 Setaria italica
Seita.2G146800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 18527223-18529222 Setaria italica
Seita.2G146800 2.0kb downstream 2.0kb downstream 4563 true scaffold_2: 18529223-18533785 Setaria italica
Seita.2G146800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 18531786-18533785 Setaria italica
Seita.2G146800 5.0kb upstream 5.0kb upstream 7563 true scaffold_2: 18524223-18531785 Setaria italica
Seita.2G146800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 18524223-18529222 Setaria italica
Seita.2G146800 5.0kb downstream 5.0kb downstream 7563 true scaffold_2: 18529223-18536785 Setaria italica
Seita.2G146800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 18531786-18536785 Setaria italica
Seita.2G146800 10.0kb upstream 10.0kb upstream 12563 true scaffold_2: 18519223-18531785 Setaria italica
Seita.2G146800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 18519223-18529222 Setaria italica
Seita.2G146800 10.0kb downstream 10.0kb downstream 12563 true scaffold_2: 18529223-18541785 Setaria italica
Seita.2G146800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 18531786-18541785 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029860 5273 Angiosperm View MSA
122052829 5267 Panicoideae Singleton cluster - no MSA
124591131 5269 Grass View MSA
121350456 5274 Embryophyte View MSA
123381742 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain