Gene : Seita.2G150000 S. italica v2.2
Defline:  (1 of 2) PTHR19288:SF33 - PHOSPHOGLYCOLATE PHOSPHATASE 2 Genomic Order:  1500
Name:  ? Seita.2G150000 Secondary Identifier:  ? PAC:32718311
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G150000 0.5kb upstream 0.5kb upstream 5786 true scaffold_2: 20458945-20464730 Setaria italica
Seita.2G150000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 20458945-20459444 Setaria italica
Seita.2G150000 0.5kb downstream 0.5kb downstream 5786 true scaffold_2: 20459445-20465230 Setaria italica
Seita.2G150000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 20464731-20465230 Setaria italica
Seita.2G150000 1.0kb upstream 1.0kb upstream 6286 true scaffold_2: 20458445-20464730 Setaria italica
Seita.2G150000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 20458445-20459444 Setaria italica
Seita.2G150000 1.0kb downstream 1.0kb downstream 6286 true scaffold_2: 20459445-20465730 Setaria italica
Seita.2G150000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 20464731-20465730 Setaria italica
Seita.2G150000 2.0kb upstream 2.0kb upstream 7286 true scaffold_2: 20457445-20464730 Setaria italica
Seita.2G150000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 20457445-20459444 Setaria italica
Seita.2G150000 2.0kb downstream 2.0kb downstream 7286 true scaffold_2: 20459445-20466730 Setaria italica
Seita.2G150000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 20464731-20466730 Setaria italica
Seita.2G150000 5.0kb upstream 5.0kb upstream 10286 true scaffold_2: 20454445-20464730 Setaria italica
Seita.2G150000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 20454445-20459444 Setaria italica
Seita.2G150000 5.0kb downstream 5.0kb downstream 10286 true scaffold_2: 20459445-20469730 Setaria italica
Seita.2G150000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 20464731-20469730 Setaria italica
Seita.2G150000 10.0kb upstream 10.0kb upstream 15286 true scaffold_2: 20449445-20464730 Setaria italica
Seita.2G150000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 20449445-20459444 Setaria italica
Seita.2G150000 10.0kb downstream 10.0kb downstream 15286 true scaffold_2: 20459445-20474730 Setaria italica
Seita.2G150000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 20464731-20474730 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177143 5267 Panicoideae View MSA
124572935 5269 Grass View MSA
122049940 5273 Angiosperm View MSA
121343932 5274 Embryophyte View MSA
123425073 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.208        
cufflinks 6.966        
cufflinks 10.196        
cufflinks 7.658        
cufflinks 6.371        
cufflinks 6.985        
cufflinks 6.659        
cufflinks 9.817        
cufflinks 7.112        
cufflinks 7.902        
cufflinks 7.236        
cufflinks 21.721     High High
cufflinks 14.231     High  
cufflinks 10.781        
cufflinks 16.934     High High
cufflinks 6.336        
cufflinks 21.167     High High
cufflinks 4.049       Low
cufflinks 8.075        
cufflinks 22.004     High High

0 Strain