Gene : Seita.2G154500 S. italica v2.2
Defline:  (1 of 1) PTHR31791:SF12 - FRIGIDA-LIKE PROTEIN 3 Genomic Order:  1545
Name:  ? Seita.2G154500 Secondary Identifier:  ? PAC:32719086
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G154500 0.5kb upstream 0.5kb upstream 4419 true scaffold_2: 21924079-21928497 Setaria italica
Seita.2G154500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 21927998-21928497 Setaria italica
Seita.2G154500 0.5kb downstream 0.5kb downstream 4419 true scaffold_2: 21923579-21927997 Setaria italica
Seita.2G154500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 21923579-21924078 Setaria italica
Seita.2G154500 1.0kb upstream 1.0kb upstream 4919 true scaffold_2: 21924079-21928997 Setaria italica
Seita.2G154500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 21927998-21928997 Setaria italica
Seita.2G154500 1.0kb downstream 1.0kb downstream 4919 true scaffold_2: 21923079-21927997 Setaria italica
Seita.2G154500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 21923079-21924078 Setaria italica
Seita.2G154500 2.0kb upstream 2.0kb upstream 5919 true scaffold_2: 21924079-21929997 Setaria italica
Seita.2G154500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 21927998-21929997 Setaria italica
Seita.2G154500 2.0kb downstream 2.0kb downstream 5919 true scaffold_2: 21922079-21927997 Setaria italica
Seita.2G154500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 21922079-21924078 Setaria italica
Seita.2G154500 5.0kb upstream 5.0kb upstream 8919 true scaffold_2: 21924079-21932997 Setaria italica
Seita.2G154500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 21927998-21932997 Setaria italica
Seita.2G154500 5.0kb downstream 5.0kb downstream 8919 true scaffold_2: 21919079-21927997 Setaria italica
Seita.2G154500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 21919079-21924078 Setaria italica
Seita.2G154500 10.0kb upstream 10.0kb upstream 13919 true scaffold_2: 21924079-21937997 Setaria italica
Seita.2G154500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 21927998-21937997 Setaria italica
Seita.2G154500 10.0kb downstream 10.0kb downstream 13919 true scaffold_2: 21914079-21927997 Setaria italica
Seita.2G154500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 21914079-21924078 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196235 5267 Panicoideae View MSA
124569933 5269 Grass View MSA
122047978 5273 Angiosperm View MSA
121351127 5274 Embryophyte View MSA
123382017 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 106.939     High High
cufflinks 73.05     High  
cufflinks 60.047     High  
cufflinks 57.143     High  
cufflinks 47.459     High  
cufflinks 86.048     High  
cufflinks 57.815     High  
cufflinks 49.566     High  
cufflinks 47.437     High  
cufflinks 61.664     High  
cufflinks 69.622     High  
cufflinks 77.164     High  
cufflinks 49.57     High  
cufflinks 39.987     High Low
cufflinks 57.952     High  
cufflinks 111.34     High High
cufflinks 66.018     High  
cufflinks 189.901     High High
cufflinks 55.731     High  
cufflinks 58.119     High  

0 Strain