Gene : Seita.2G157900 S. italica v2.2
Defline:  (1 of 1) 2.4.1.260 - Dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase / Dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl alpha-6-mannosyltransferase Genomic Order:  1579
Name:  ? Seita.2G157900 Secondary Identifier:  ? PAC:32722411
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G157900 0.5kb upstream 0.5kb upstream 10538 true scaffold_2: 22804390-22814927 Setaria italica
Seita.2G157900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 22804390-22804889 Setaria italica
Seita.2G157900 0.5kb downstream 0.5kb downstream 10538 true scaffold_2: 22804890-22815427 Setaria italica
Seita.2G157900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 22814928-22815427 Setaria italica
Seita.2G157900 1.0kb upstream 1.0kb upstream 11038 true scaffold_2: 22803890-22814927 Setaria italica
Seita.2G157900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 22803890-22804889 Setaria italica
Seita.2G157900 1.0kb downstream 1.0kb downstream 11038 true scaffold_2: 22804890-22815927 Setaria italica
Seita.2G157900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 22814928-22815927 Setaria italica
Seita.2G157900 2.0kb upstream 2.0kb upstream 12038 true scaffold_2: 22802890-22814927 Setaria italica
Seita.2G157900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 22802890-22804889 Setaria italica
Seita.2G157900 2.0kb downstream 2.0kb downstream 12038 true scaffold_2: 22804890-22816927 Setaria italica
Seita.2G157900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 22814928-22816927 Setaria italica
Seita.2G157900 5.0kb upstream 5.0kb upstream 15038 true scaffold_2: 22799890-22814927 Setaria italica
Seita.2G157900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 22799890-22804889 Setaria italica
Seita.2G157900 5.0kb downstream 5.0kb downstream 15038 true scaffold_2: 22804890-22819927 Setaria italica
Seita.2G157900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 22814928-22819927 Setaria italica
Seita.2G157900 10.0kb upstream 10.0kb upstream 20038 true scaffold_2: 22794890-22814927 Setaria italica
Seita.2G157900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 22794890-22804889 Setaria italica
Seita.2G157900 10.0kb downstream 10.0kb downstream 20038 true scaffold_2: 22804890-22824927 Setaria italica
Seita.2G157900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 22814928-22824927 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184032 5267 Panicoideae View MSA
124570726 5269 Grass View MSA
122046384 5273 Angiosperm View MSA
121345023 5274 Embryophyte View MSA
123424059 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.889       High
cufflinks 1.733        
cufflinks 1.31        
cufflinks 1.038       Low
cufflinks 1.047       Low
cufflinks 1.938       High
cufflinks 1.488        
cufflinks 1.344        
cufflinks 1.126       Low
cufflinks 1.967       High
cufflinks 1.673        
cufflinks 1.549        
cufflinks 1.479        
cufflinks 1.461        
cufflinks 1.693        
cufflinks 1.573        
cufflinks 1.957       High
cufflinks 1.397        
cufflinks 0.983       Low
cufflinks 1.636        

0 Strain