Gene : Seita.2G096900 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  969
Name:  ? Seita.2G096900 Secondary Identifier:  ? PAC:32720456
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G096900 0.5kb upstream 0.5kb upstream 5784 true scaffold_2: 8772443-8778226 Setaria italica
Seita.2G096900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 8777727-8778226 Setaria italica
Seita.2G096900 0.5kb downstream 0.5kb downstream 5784 true scaffold_2: 8771943-8777726 Setaria italica
Seita.2G096900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8771943-8772442 Setaria italica
Seita.2G096900 1.0kb upstream 1.0kb upstream 6284 true scaffold_2: 8772443-8778726 Setaria italica
Seita.2G096900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 8777727-8778726 Setaria italica
Seita.2G096900 1.0kb downstream 1.0kb downstream 6284 true scaffold_2: 8771443-8777726 Setaria italica
Seita.2G096900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 8771443-8772442 Setaria italica
Seita.2G096900 2.0kb upstream 2.0kb upstream 7284 true scaffold_2: 8772443-8779726 Setaria italica
Seita.2G096900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 8777727-8779726 Setaria italica
Seita.2G096900 2.0kb downstream 2.0kb downstream 7284 true scaffold_2: 8770443-8777726 Setaria italica
Seita.2G096900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 8770443-8772442 Setaria italica
Seita.2G096900 5.0kb upstream 5.0kb upstream 10284 true scaffold_2: 8772443-8782726 Setaria italica
Seita.2G096900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 8777727-8782726 Setaria italica
Seita.2G096900 5.0kb downstream 5.0kb downstream 10284 true scaffold_2: 8767443-8777726 Setaria italica
Seita.2G096900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 8767443-8772442 Setaria italica
Seita.2G096900 10.0kb upstream 10.0kb upstream 15284 true scaffold_2: 8772443-8787726 Setaria italica
Seita.2G096900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 8777727-8787726 Setaria italica
Seita.2G096900 10.0kb downstream 10.0kb downstream 15284 true scaffold_2: 8762443-8777726 Setaria italica
Seita.2G096900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 8762443-8772442 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189939 5267 Panicoideae View MSA
124575773 5269 Grass View MSA
122042185 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.478        
cufflinks 3.775       High
cufflinks 1.596        
cufflinks 1.231       Low
cufflinks 1.635        
cufflinks 2.92       High
cufflinks 2.163        
cufflinks 1.659        
cufflinks 2.188        
cufflinks 1.486        
cufflinks 2.568        
cufflinks 2.153        
cufflinks 1.474       Low
cufflinks 1.687        
cufflinks 2.461        
cufflinks 2.202        
cufflinks 2.229        
cufflinks 2.499        
cufflinks 1.11       Low
cufflinks 2.245        

0 Strain