Gene : Seita.2G102500 S. italica v2.2
Defline:  (1 of 1) PTHR15629:SF2 - SH3 DOMAIN-CONTAINING YSC84-LIKE PROTEIN 1 Genomic Order:  1025
Name:  ? Seita.2G102500 Secondary Identifier:  ? PAC:32719783
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G102500 0.5kb upstream 0.5kb upstream 4300 true scaffold_2: 9655107-9659406 Setaria italica
Seita.2G102500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 9655107-9655606 Setaria italica
Seita.2G102500 0.5kb downstream 0.5kb downstream 4300 true scaffold_2: 9655607-9659906 Setaria italica
Seita.2G102500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 9659407-9659906 Setaria italica
Seita.2G102500 1.0kb upstream 1.0kb upstream 4800 true scaffold_2: 9654607-9659406 Setaria italica
Seita.2G102500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 9654607-9655606 Setaria italica
Seita.2G102500 1.0kb downstream 1.0kb downstream 4800 true scaffold_2: 9655607-9660406 Setaria italica
Seita.2G102500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 9659407-9660406 Setaria italica
Seita.2G102500 2.0kb upstream 2.0kb upstream 5800 true scaffold_2: 9653607-9659406 Setaria italica
Seita.2G102500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 9653607-9655606 Setaria italica
Seita.2G102500 2.0kb downstream 2.0kb downstream 5800 true scaffold_2: 9655607-9661406 Setaria italica
Seita.2G102500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 9659407-9661406 Setaria italica
Seita.2G102500 5.0kb upstream 5.0kb upstream 8800 true scaffold_2: 9650607-9659406 Setaria italica
Seita.2G102500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 9650607-9655606 Setaria italica
Seita.2G102500 5.0kb downstream 5.0kb downstream 8800 true scaffold_2: 9655607-9664406 Setaria italica
Seita.2G102500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 9659407-9664406 Setaria italica
Seita.2G102500 10.0kb upstream 10.0kb upstream 13800 true scaffold_2: 9645607-9659406 Setaria italica
Seita.2G102500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 9645607-9655606 Setaria italica
Seita.2G102500 10.0kb downstream 10.0kb downstream 13800 true scaffold_2: 9655607-9669406 Setaria italica
Seita.2G102500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 9659407-9669406 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185640 5267 Panicoideae View MSA
124575860 5269 Grass View MSA
122046278 5273 Angiosperm View MSA
121345874 5274 Embryophyte View MSA
123426176 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.396        
cufflinks 10.614        
cufflinks 22.023     High High
cufflinks 20.029     High High
cufflinks 16.504     High  
cufflinks 10.872        
cufflinks 12.708        
cufflinks 11.666        
cufflinks 10.839        
cufflinks 6.19       Low
cufflinks 11.087        
cufflinks 15.076     High  
cufflinks 15.77     High  
cufflinks 21.153     High High
cufflinks 13.287        
cufflinks 15.892     High  
cufflinks 11.683        
cufflinks 22.531     High High
cufflinks 19.477     High High
cufflinks 10.846        

0 Strain