Gene : Seita.2G109900 S. italica v2.2
Defline:  (1 of 1) PTHR23111//PTHR23111:SF29 - ZINC FINGER PROTEIN Genomic Order:  1099
Name:  ? Seita.2G109900 Secondary Identifier:  ? PAC:32718314
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G109900 0.5kb upstream 0.5kb upstream 7498 true scaffold_2: 10623303-10630800 Setaria italica
Seita.2G109900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 10630301-10630800 Setaria italica
Seita.2G109900 0.5kb downstream 0.5kb downstream 7498 true scaffold_2: 10622803-10630300 Setaria italica
Seita.2G109900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 10622803-10623302 Setaria italica
Seita.2G109900 1.0kb upstream 1.0kb upstream 7998 true scaffold_2: 10623303-10631300 Setaria italica
Seita.2G109900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 10630301-10631300 Setaria italica
Seita.2G109900 1.0kb downstream 1.0kb downstream 7998 true scaffold_2: 10622303-10630300 Setaria italica
Seita.2G109900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 10622303-10623302 Setaria italica
Seita.2G109900 2.0kb upstream 2.0kb upstream 8998 true scaffold_2: 10623303-10632300 Setaria italica
Seita.2G109900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 10630301-10632300 Setaria italica
Seita.2G109900 2.0kb downstream 2.0kb downstream 8998 true scaffold_2: 10621303-10630300 Setaria italica
Seita.2G109900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 10621303-10623302 Setaria italica
Seita.2G109900 5.0kb upstream 5.0kb upstream 11998 true scaffold_2: 10623303-10635300 Setaria italica
Seita.2G109900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 10630301-10635300 Setaria italica
Seita.2G109900 5.0kb downstream 5.0kb downstream 11998 true scaffold_2: 10618303-10630300 Setaria italica
Seita.2G109900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 10618303-10623302 Setaria italica
Seita.2G109900 10.0kb upstream 10.0kb upstream 16998 true scaffold_2: 10623303-10640300 Setaria italica
Seita.2G109900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 10630301-10640300 Setaria italica
Seita.2G109900 10.0kb downstream 10.0kb downstream 16998 true scaffold_2: 10613303-10630300 Setaria italica
Seita.2G109900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 10613303-10623302 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177145 5267 Panicoideae View MSA
124578146 5269 Grass View MSA
122043265 5273 Angiosperm View MSA
121349230 5274 Embryophyte View MSA
123427278 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.666       High
cufflinks 2.726       High
cufflinks 1.706        
cufflinks 1.009       Low
cufflinks 1.128       Low
cufflinks 2.624       High
cufflinks 1.423        
cufflinks 1.348        
cufflinks 1.397        
cufflinks 1.294        
cufflinks 2.143        
cufflinks 2.127        
cufflinks 1.137       Low
cufflinks 1.925        
cufflinks 2.183        
cufflinks 1.707        
cufflinks 2.417        
cufflinks 2.96       High
cufflinks 0.834       Low
cufflinks 1.836        

0 Strain