Gene : Seita.2G112300 S. italica v2.2
Defline:  (1 of 2) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE Genomic Order:  1123
Name:  ? Seita.2G112300 Secondary Identifier:  ? PAC:32718544
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G112300 0.5kb upstream 0.5kb upstream 2166 true scaffold_2: 10942171-10944336 Setaria italica
Seita.2G112300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 10943837-10944336 Setaria italica
Seita.2G112300 0.5kb downstream 0.5kb downstream 2166 true scaffold_2: 10941671-10943836 Setaria italica
Seita.2G112300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 10941671-10942170 Setaria italica
Seita.2G112300 1.0kb upstream 1.0kb upstream 2666 true scaffold_2: 10942171-10944836 Setaria italica
Seita.2G112300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 10943837-10944836 Setaria italica
Seita.2G112300 1.0kb downstream 1.0kb downstream 2666 true scaffold_2: 10941171-10943836 Setaria italica
Seita.2G112300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 10941171-10942170 Setaria italica
Seita.2G112300 2.0kb upstream 2.0kb upstream 3666 true scaffold_2: 10942171-10945836 Setaria italica
Seita.2G112300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 10943837-10945836 Setaria italica
Seita.2G112300 2.0kb downstream 2.0kb downstream 3666 true scaffold_2: 10940171-10943836 Setaria italica
Seita.2G112300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 10940171-10942170 Setaria italica
Seita.2G112300 5.0kb upstream 5.0kb upstream 6666 true scaffold_2: 10942171-10948836 Setaria italica
Seita.2G112300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 10943837-10948836 Setaria italica
Seita.2G112300 5.0kb downstream 5.0kb downstream 6666 true scaffold_2: 10937171-10943836 Setaria italica
Seita.2G112300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 10937171-10942170 Setaria italica
Seita.2G112300 10.0kb upstream 10.0kb upstream 11666 true scaffold_2: 10942171-10953836 Setaria italica
Seita.2G112300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 10943837-10953836 Setaria italica
Seita.2G112300 10.0kb downstream 10.0kb downstream 11666 true scaffold_2: 10932171-10943836 Setaria italica
Seita.2G112300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 10932171-10942170 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186074 5267 Panicoideae View MSA
124577325 5269 Grass View MSA
122042999 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 18.893     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.546        
cufflinks 0.007     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.05     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain