Gene : Seita.2G114800 S. italica v2.2
Defline:  (1 of 2) PTHR11800:SF13 - DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1 Genomic Order:  1148
Name:  ? Seita.2G114800 Secondary Identifier:  ? PAC:32723550
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G114800 0.5kb upstream 0.5kb upstream 5684 true scaffold_2: 11345797-11351480 Setaria italica
Seita.2G114800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 11350981-11351480 Setaria italica
Seita.2G114800 0.5kb downstream 0.5kb downstream 5684 true scaffold_2: 11345297-11350980 Setaria italica
Seita.2G114800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 11345297-11345796 Setaria italica
Seita.2G114800 1.0kb upstream 1.0kb upstream 6184 true scaffold_2: 11345797-11351980 Setaria italica
Seita.2G114800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 11350981-11351980 Setaria italica
Seita.2G114800 1.0kb downstream 1.0kb downstream 6184 true scaffold_2: 11344797-11350980 Setaria italica
Seita.2G114800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 11344797-11345796 Setaria italica
Seita.2G114800 2.0kb upstream 2.0kb upstream 7184 true scaffold_2: 11345797-11352980 Setaria italica
Seita.2G114800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 11350981-11352980 Setaria italica
Seita.2G114800 2.0kb downstream 2.0kb downstream 7184 true scaffold_2: 11343797-11350980 Setaria italica
Seita.2G114800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 11343797-11345796 Setaria italica
Seita.2G114800 5.0kb upstream 5.0kb upstream 10184 true scaffold_2: 11345797-11355980 Setaria italica
Seita.2G114800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 11350981-11355980 Setaria italica
Seita.2G114800 5.0kb downstream 5.0kb downstream 10184 true scaffold_2: 11340797-11350980 Setaria italica
Seita.2G114800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 11340797-11345796 Setaria italica
Seita.2G114800 10.0kb upstream 10.0kb upstream 15184 true scaffold_2: 11345797-11360980 Setaria italica
Seita.2G114800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 11350981-11360980 Setaria italica
Seita.2G114800 10.0kb downstream 10.0kb downstream 15184 true scaffold_2: 11335797-11350980 Setaria italica
Seita.2G114800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 11335797-11345796 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185899 5267 Panicoideae View MSA
124573072 5269 Grass View MSA
122043698 5273 Angiosperm View MSA
121344052 5274 Embryophyte View MSA
123424148 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.204        
cufflinks 2.956        
cufflinks 0.999        
cufflinks 0.371       Low
cufflinks 0.545       Low
cufflinks 3.563       High
cufflinks 1.657        
cufflinks 1.971        
cufflinks 2.118        
cufflinks 2.337        
cufflinks 2.361        
cufflinks 2.85        
cufflinks 1.742        
cufflinks 1.987        
cufflinks 2.754        
cufflinks 1.627        
cufflinks 3.85       High
cufflinks 2.044        
cufflinks 0.551       Low
cufflinks 3.197        

0 Strain