Gene : Seita.2G117000 S. italica v2.2
Defline:  (1 of 1) PTHR34549:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED Genomic Order:  1170
Name:  ? Seita.2G117000 Secondary Identifier:  ? PAC:32723178
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G117000 0.5kb upstream 0.5kb upstream 1712 true scaffold_2: 11866675-11868386 Setaria italica
Seita.2G117000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 11866675-11867174 Setaria italica
Seita.2G117000 0.5kb downstream 0.5kb downstream 1712 true scaffold_2: 11867175-11868886 Setaria italica
Seita.2G117000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 11868387-11868886 Setaria italica
Seita.2G117000 1.0kb upstream 1.0kb upstream 2212 true scaffold_2: 11866175-11868386 Setaria italica
Seita.2G117000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 11866175-11867174 Setaria italica
Seita.2G117000 1.0kb downstream 1.0kb downstream 2212 true scaffold_2: 11867175-11869386 Setaria italica
Seita.2G117000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 11868387-11869386 Setaria italica
Seita.2G117000 2.0kb upstream 2.0kb upstream 3212 true scaffold_2: 11865175-11868386 Setaria italica
Seita.2G117000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 11865175-11867174 Setaria italica
Seita.2G117000 2.0kb downstream 2.0kb downstream 3212 true scaffold_2: 11867175-11870386 Setaria italica
Seita.2G117000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 11868387-11870386 Setaria italica
Seita.2G117000 5.0kb upstream 5.0kb upstream 6212 true scaffold_2: 11862175-11868386 Setaria italica
Seita.2G117000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 11862175-11867174 Setaria italica
Seita.2G117000 5.0kb downstream 5.0kb downstream 6212 true scaffold_2: 11867175-11873386 Setaria italica
Seita.2G117000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 11868387-11873386 Setaria italica
Seita.2G117000 10.0kb upstream 10.0kb upstream 11212 true scaffold_2: 11857175-11868386 Setaria italica
Seita.2G117000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 11857175-11867174 Setaria italica
Seita.2G117000 10.0kb downstream 10.0kb downstream 11212 true scaffold_2: 11867175-11878386 Setaria italica
Seita.2G117000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 11868387-11878386 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188988 5267 Panicoideae View MSA
124588959 5269 Grass View MSA
122047877 5273 Angiosperm View MSA
121348572 5274 Embryophyte View MSA
123426677 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.765     High  
cufflinks 82.635     High  
cufflinks 327.353     High  
cufflinks 545.234     High  
cufflinks 778.57     High High
cufflinks 72.749     High  
cufflinks 577.062     High  
cufflinks 893.185     High High
cufflinks 621.155     High  
cufflinks 54.273     High  
cufflinks 16.638     High  
cufflinks 0.629       Low
cufflinks 7.482        
cufflinks 201.037     High  
cufflinks 0.367       Low
cufflinks 423.407     High  
cufflinks 1.426       Low
cufflinks 32.972     High  
cufflinks 469.046     High  
cufflinks 0.96       Low

0 Strain