Gene : Seita.2G119200 S. italica v2.2
Defline:  (1 of 1) PTHR12654//PTHR12654:SF5 - BILE ACID BETA-GLUCOSIDASE-RELATED Genomic Order:  1192
Name:  ? Seita.2G119200 Secondary Identifier:  ? PAC:32722752
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G119200 0.5kb upstream 0.5kb upstream 10074 true scaffold_2: 12327588-12337661 Setaria italica
Seita.2G119200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 12337162-12337661 Setaria italica
Seita.2G119200 0.5kb downstream 0.5kb downstream 10074 true scaffold_2: 12327088-12337161 Setaria italica
Seita.2G119200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 12327088-12327587 Setaria italica
Seita.2G119200 1.0kb upstream 1.0kb upstream 10574 true scaffold_2: 12327588-12338161 Setaria italica
Seita.2G119200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 12337162-12338161 Setaria italica
Seita.2G119200 1.0kb downstream 1.0kb downstream 10574 true scaffold_2: 12326588-12337161 Setaria italica
Seita.2G119200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 12326588-12327587 Setaria italica
Seita.2G119200 2.0kb upstream 2.0kb upstream 11574 true scaffold_2: 12327588-12339161 Setaria italica
Seita.2G119200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 12337162-12339161 Setaria italica
Seita.2G119200 2.0kb downstream 2.0kb downstream 11574 true scaffold_2: 12325588-12337161 Setaria italica
Seita.2G119200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 12325588-12327587 Setaria italica
Seita.2G119200 5.0kb upstream 5.0kb upstream 14574 true scaffold_2: 12327588-12342161 Setaria italica
Seita.2G119200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 12337162-12342161 Setaria italica
Seita.2G119200 5.0kb downstream 5.0kb downstream 14574 true scaffold_2: 12322588-12337161 Setaria italica
Seita.2G119200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 12322588-12327587 Setaria italica
Seita.2G119200 10.0kb upstream 10.0kb upstream 19574 true scaffold_2: 12327588-12347161 Setaria italica
Seita.2G119200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 12337162-12347161 Setaria italica
Seita.2G119200 10.0kb downstream 10.0kb downstream 19574 true scaffold_2: 12317588-12337161 Setaria italica
Seita.2G119200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 12317588-12327587 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183336 5267 Panicoideae View MSA
124582367 5269 Grass View MSA
122045045 5273 Angiosperm View MSA
121351037 5274 Embryophyte View MSA
123425340 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.852        
cufflinks 1.917       Low
cufflinks 5.831       High
cufflinks 4.635        
cufflinks 3.287        
cufflinks 1.771       Low
cufflinks 3.608        
cufflinks 2.827        
cufflinks 1.956       Low
cufflinks 0.929       Low
cufflinks 1.922       Low
cufflinks 5.324        
cufflinks 4.322        
cufflinks 4.632        
cufflinks 4.853        
cufflinks 4.707        
cufflinks 4.222        
cufflinks 6.334       High
cufflinks 3.744        
cufflinks 4.797        

0 Strain