Gene : Seita.2G198100 S. italica v2.2
Defline:  (1 of 2) PTHR28620:SF1 - PROTEIN F25B4.8, ISOFORM A Genomic Order:  1981
Name:  ? Seita.2G198100 Secondary Identifier:  ? PAC:32722061
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G198100 0.5kb upstream 0.5kb upstream 1317 true scaffold_2: 29579200-29580516 Setaria italica
Seita.2G198100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 29580017-29580516 Setaria italica
Seita.2G198100 0.5kb downstream 0.5kb downstream 1317 true scaffold_2: 29578700-29580016 Setaria italica
Seita.2G198100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 29578700-29579199 Setaria italica
Seita.2G198100 1.0kb upstream 1.0kb upstream 1817 true scaffold_2: 29579200-29581016 Setaria italica
Seita.2G198100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 29580017-29581016 Setaria italica
Seita.2G198100 1.0kb downstream 1.0kb downstream 1817 true scaffold_2: 29578200-29580016 Setaria italica
Seita.2G198100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 29578200-29579199 Setaria italica
Seita.2G198100 2.0kb upstream 2.0kb upstream 2817 true scaffold_2: 29579200-29582016 Setaria italica
Seita.2G198100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 29580017-29582016 Setaria italica
Seita.2G198100 2.0kb downstream 2.0kb downstream 2817 true scaffold_2: 29577200-29580016 Setaria italica
Seita.2G198100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 29577200-29579199 Setaria italica
Seita.2G198100 5.0kb upstream 5.0kb upstream 5817 true scaffold_2: 29579200-29585016 Setaria italica
Seita.2G198100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 29580017-29585016 Setaria italica
Seita.2G198100 5.0kb downstream 5.0kb downstream 5817 true scaffold_2: 29574200-29580016 Setaria italica
Seita.2G198100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 29574200-29579199 Setaria italica
Seita.2G198100 10.0kb upstream 10.0kb upstream 10817 true scaffold_2: 29579200-29590016 Setaria italica
Seita.2G198100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 29580017-29590016 Setaria italica
Seita.2G198100 10.0kb downstream 10.0kb downstream 10817 true scaffold_2: 29569200-29580016 Setaria italica
Seita.2G198100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 29569200-29579199 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191652 5267 Panicoideae View MSA
124589960 5269 Grass View MSA
122046805 5273 Angiosperm View MSA
121351715 5274 Embryophyte View MSA
123426563 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.947       High
cufflinks 0.59        
cufflinks 0.235       Low
cufflinks 0.206       Low
cufflinks 0.163       Low
cufflinks 0.391       Low
cufflinks 1.437        
cufflinks 0.702        
cufflinks 0.897        
cufflinks 14.613       High
cufflinks 3.663        
cufflinks 7.285       High
cufflinks 7.668       High
cufflinks 10.325       High
cufflinks 1.46        
cufflinks 0.871        
cufflinks 2.601        
cufflinks 1.108        
cufflinks 12.917     High High
cufflinks 2.058        

0 Strain