Gene : Seita.2G198000 S. italica v2.2
Defline:  (1 of 2) PTHR28620:SF1 - PROTEIN F25B4.8, ISOFORM A Genomic Order:  1980
Name:  ? Seita.2G198000 Secondary Identifier:  ? PAC:32720220
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G198000 0.5kb upstream 0.5kb upstream 3102 true scaffold_2: 29575942-29579043 Setaria italica
Seita.2G198000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 29578544-29579043 Setaria italica
Seita.2G198000 0.5kb downstream 0.5kb downstream 3102 true scaffold_2: 29575442-29578543 Setaria italica
Seita.2G198000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 29575442-29575941 Setaria italica
Seita.2G198000 1.0kb upstream 1.0kb upstream 3602 true scaffold_2: 29575942-29579543 Setaria italica
Seita.2G198000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 29578544-29579543 Setaria italica
Seita.2G198000 1.0kb downstream 1.0kb downstream 3602 true scaffold_2: 29574942-29578543 Setaria italica
Seita.2G198000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 29574942-29575941 Setaria italica
Seita.2G198000 2.0kb upstream 2.0kb upstream 4602 true scaffold_2: 29575942-29580543 Setaria italica
Seita.2G198000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 29578544-29580543 Setaria italica
Seita.2G198000 2.0kb downstream 2.0kb downstream 4602 true scaffold_2: 29573942-29578543 Setaria italica
Seita.2G198000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 29573942-29575941 Setaria italica
Seita.2G198000 5.0kb upstream 5.0kb upstream 7602 true scaffold_2: 29575942-29583543 Setaria italica
Seita.2G198000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 29578544-29583543 Setaria italica
Seita.2G198000 5.0kb downstream 5.0kb downstream 7602 true scaffold_2: 29570942-29578543 Setaria italica
Seita.2G198000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 29570942-29575941 Setaria italica
Seita.2G198000 10.0kb upstream 10.0kb upstream 12602 true scaffold_2: 29575942-29588543 Setaria italica
Seita.2G198000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 29578544-29588543 Setaria italica
Seita.2G198000 10.0kb downstream 10.0kb downstream 12602 true scaffold_2: 29565942-29578543 Setaria italica
Seita.2G198000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 29565942-29575941 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175088 5267 Panicoideae View MSA
124589960 5269 Grass View MSA
122046805 5273 Angiosperm View MSA
121351715 5274 Embryophyte View MSA
123426563 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.718        
cufflinks 1.483        
cufflinks 0.326       Low
cufflinks 0.145       Low
cufflinks 0.131       Low
cufflinks 1.145        
cufflinks 1.215        
cufflinks 0.764        
cufflinks 0.262       Low
cufflinks 1.41        
cufflinks 1.775       High
cufflinks 0.814        
cufflinks 1.209        
cufflinks 0.842        
cufflinks 1.446        
cufflinks 0.712        
cufflinks 1.531        
cufflinks 1.025        
cufflinks 0.688        
cufflinks 0.94        

0 Strain