Gene : Seita.2G200500 S. italica v2.2
Defline:  (1 of 1) PTHR23153:SF39 - CDC48-INTERACTING UBX-DOMAIN PROTEIN Genomic Order:  2005
Name:  ? Seita.2G200500 Secondary Identifier:  ? PAC:32718341
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G200500 0.5kb upstream 0.5kb upstream 6783 true scaffold_2: 29991403-29998185 Setaria italica
Seita.2G200500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 29997686-29998185 Setaria italica
Seita.2G200500 0.5kb downstream 0.5kb downstream 6783 true scaffold_2: 29990903-29997685 Setaria italica
Seita.2G200500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 29990903-29991402 Setaria italica
Seita.2G200500 1.0kb upstream 1.0kb upstream 7283 true scaffold_2: 29991403-29998685 Setaria italica
Seita.2G200500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 29997686-29998685 Setaria italica
Seita.2G200500 1.0kb downstream 1.0kb downstream 7283 true scaffold_2: 29990403-29997685 Setaria italica
Seita.2G200500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 29990403-29991402 Setaria italica
Seita.2G200500 2.0kb upstream 2.0kb upstream 8283 true scaffold_2: 29991403-29999685 Setaria italica
Seita.2G200500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 29997686-29999685 Setaria italica
Seita.2G200500 2.0kb downstream 2.0kb downstream 8283 true scaffold_2: 29989403-29997685 Setaria italica
Seita.2G200500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 29989403-29991402 Setaria italica
Seita.2G200500 5.0kb upstream 5.0kb upstream 11283 true scaffold_2: 29991403-30002685 Setaria italica
Seita.2G200500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 29997686-30002685 Setaria italica
Seita.2G200500 5.0kb downstream 5.0kb downstream 11283 true scaffold_2: 29986403-29997685 Setaria italica
Seita.2G200500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 29986403-29991402 Setaria italica
Seita.2G200500 10.0kb upstream 10.0kb upstream 16283 true scaffold_2: 29991403-30007685 Setaria italica
Seita.2G200500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 29997686-30007685 Setaria italica
Seita.2G200500 10.0kb downstream 10.0kb downstream 16283 true scaffold_2: 29981403-29997685 Setaria italica
Seita.2G200500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 29981403-29991402 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194607 5267 Panicoideae View MSA
124575517 5269 Grass View MSA
122047714 5273 Angiosperm View MSA
121346643 5274 Embryophyte View MSA
123428120 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.956        
cufflinks 2.875        
cufflinks 3.592        
cufflinks 2.786        
cufflinks 2.832        
cufflinks 2.746        
cufflinks 2.748        
cufflinks 2.901        
cufflinks 2.478       Low
cufflinks 6.036       High
cufflinks 4.365        
cufflinks 5.021       High
cufflinks 3.648        
cufflinks 3.75        
cufflinks 4.487        
cufflinks 2.271       Low
cufflinks 4.072        
cufflinks 5.324       High
cufflinks 4.423        
cufflinks 4.028        

0 Strain