Gene : Seita.2G208500 S. italica v2.2
Defline:  (1 of 130) PF02458 - Transferase family (Transferase) Genomic Order:  2085
Name:  ? Seita.2G208500 Secondary Identifier:  ? PAC:32723316
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-361 Setaria italica pathologic  
Sitalica PWY-6040 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G208500 0.5kb upstream 0.5kb upstream 2502 true scaffold_2: 31022004-31024505 Setaria italica
Seita.2G208500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 31024006-31024505 Setaria italica
Seita.2G208500 0.5kb downstream 0.5kb downstream 2502 true scaffold_2: 31021504-31024005 Setaria italica
Seita.2G208500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 31021504-31022003 Setaria italica
Seita.2G208500 1.0kb upstream 1.0kb upstream 3002 true scaffold_2: 31022004-31025005 Setaria italica
Seita.2G208500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 31024006-31025005 Setaria italica
Seita.2G208500 1.0kb downstream 1.0kb downstream 3002 true scaffold_2: 31021004-31024005 Setaria italica
Seita.2G208500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 31021004-31022003 Setaria italica
Seita.2G208500 2.0kb upstream 2.0kb upstream 4002 true scaffold_2: 31022004-31026005 Setaria italica
Seita.2G208500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 31024006-31026005 Setaria italica
Seita.2G208500 2.0kb downstream 2.0kb downstream 4002 true scaffold_2: 31020004-31024005 Setaria italica
Seita.2G208500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 31020004-31022003 Setaria italica
Seita.2G208500 5.0kb upstream 5.0kb upstream 7002 true scaffold_2: 31022004-31029005 Setaria italica
Seita.2G208500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 31024006-31029005 Setaria italica
Seita.2G208500 5.0kb downstream 5.0kb downstream 7002 true scaffold_2: 31017004-31024005 Setaria italica
Seita.2G208500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 31017004-31022003 Setaria italica
Seita.2G208500 10.0kb upstream 10.0kb upstream 12002 true scaffold_2: 31022004-31034005 Setaria italica
Seita.2G208500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 31024006-31034005 Setaria italica
Seita.2G208500 10.0kb downstream 10.0kb downstream 12002 true scaffold_2: 31012004-31024005 Setaria italica
Seita.2G208500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 31012004-31022003 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994011 5273 Angiosperm View MSA
122186629 5267 Panicoideae View MSA
124582486 5269 Grass View MSA
121264258 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.025        
cufflinks 1.002        
cufflinks 0.118       Low
cufflinks 0.157       Low
cufflinks 0.308        
cufflinks 1.408        
cufflinks 1.201        
cufflinks 0.882        
cufflinks 1.201        
cufflinks 1.979        
cufflinks 1.285        
cufflinks 1.493        
cufflinks 2.431        
cufflinks 0.157       Low
cufflinks 4.002       High
cufflinks 0.368        
cufflinks 2.736       High
cufflinks 0.674        
cufflinks 0.213       Low
cufflinks 3.274       High

0 Strain