Gene : Seita.2G216200 S. italica v2.2
Defline:  (1 of 2) PF07082 - Protein of unknown function (DUF1350) (DUF1350) Genomic Order:  2162
Name:  ? Seita.2G216200 Secondary Identifier:  ? PAC:32719179
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G216200 0.5kb upstream 0.5kb upstream 6474 true scaffold_2: 31788785-31795258 Setaria italica
Seita.2G216200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 31788785-31789284 Setaria italica
Seita.2G216200 0.5kb downstream 0.5kb downstream 6474 true scaffold_2: 31789285-31795758 Setaria italica
Seita.2G216200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 31795259-31795758 Setaria italica
Seita.2G216200 1.0kb upstream 1.0kb upstream 6974 true scaffold_2: 31788285-31795258 Setaria italica
Seita.2G216200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 31788285-31789284 Setaria italica
Seita.2G216200 1.0kb downstream 1.0kb downstream 6974 true scaffold_2: 31789285-31796258 Setaria italica
Seita.2G216200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 31795259-31796258 Setaria italica
Seita.2G216200 2.0kb upstream 2.0kb upstream 7974 true scaffold_2: 31787285-31795258 Setaria italica
Seita.2G216200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 31787285-31789284 Setaria italica
Seita.2G216200 2.0kb downstream 2.0kb downstream 7974 true scaffold_2: 31789285-31797258 Setaria italica
Seita.2G216200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 31795259-31797258 Setaria italica
Seita.2G216200 5.0kb upstream 5.0kb upstream 10974 true scaffold_2: 31784285-31795258 Setaria italica
Seita.2G216200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 31784285-31789284 Setaria italica
Seita.2G216200 5.0kb downstream 5.0kb downstream 10974 true scaffold_2: 31789285-31800258 Setaria italica
Seita.2G216200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 31795259-31800258 Setaria italica
Seita.2G216200 10.0kb upstream 10.0kb upstream 15974 true scaffold_2: 31779285-31795258 Setaria italica
Seita.2G216200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 31779285-31789284 Setaria italica
Seita.2G216200 10.0kb downstream 10.0kb downstream 15974 true scaffold_2: 31789285-31805258 Setaria italica
Seita.2G216200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 31795259-31805258 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184043 5267 Panicoideae View MSA
124582153 5269 Grass View MSA
122042192 5273 Angiosperm View MSA
121344572 5274 Embryophyte View MSA
123427638 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.774        
cufflinks 2.965        
cufflinks 6.408        
cufflinks 7.073        
cufflinks 9.86       High
cufflinks 2.666        
cufflinks 4.31        
cufflinks 8.028        
cufflinks 7.537        
cufflinks 3.325        
cufflinks 2.373       Low
cufflinks 2.537        
cufflinks 2.238       Low
cufflinks 7.711        
cufflinks 2.0       Low
cufflinks 7.745        
cufflinks 3.61        
cufflinks 4.696        
cufflinks 15.542     High High
cufflinks 2.076       Low

0 Strain