Gene : Seita.2G218800 S. italica v2.2
Genomic Order:  2188 Name:  ? Seita.2G218800
Secondary Identifier:  ? PAC:32721795
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G218800 0.5kb upstream 0.5kb upstream 3388 true scaffold_2: 32100163-32103550 Setaria italica
Seita.2G218800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 32100163-32100662 Setaria italica
Seita.2G218800 0.5kb downstream 0.5kb downstream 3388 true scaffold_2: 32100663-32104050 Setaria italica
Seita.2G218800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 32103551-32104050 Setaria italica
Seita.2G218800 1.0kb upstream 1.0kb upstream 3888 true scaffold_2: 32099663-32103550 Setaria italica
Seita.2G218800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 32099663-32100662 Setaria italica
Seita.2G218800 1.0kb downstream 1.0kb downstream 3888 true scaffold_2: 32100663-32104550 Setaria italica
Seita.2G218800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 32103551-32104550 Setaria italica
Seita.2G218800 2.0kb upstream 2.0kb upstream 4888 true scaffold_2: 32098663-32103550 Setaria italica
Seita.2G218800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 32098663-32100662 Setaria italica
Seita.2G218800 2.0kb downstream 2.0kb downstream 4888 true scaffold_2: 32100663-32105550 Setaria italica
Seita.2G218800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 32103551-32105550 Setaria italica
Seita.2G218800 5.0kb upstream 5.0kb upstream 7888 true scaffold_2: 32095663-32103550 Setaria italica
Seita.2G218800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 32095663-32100662 Setaria italica
Seita.2G218800 5.0kb downstream 5.0kb downstream 7888 true scaffold_2: 32100663-32108550 Setaria italica
Seita.2G218800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 32103551-32108550 Setaria italica
Seita.2G218800 10.0kb upstream 10.0kb upstream 12888 true scaffold_2: 32090663-32103550 Setaria italica
Seita.2G218800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 32090663-32100662 Setaria italica
Seita.2G218800 10.0kb downstream 10.0kb downstream 12888 true scaffold_2: 32100663-32113550 Setaria italica
Seita.2G218800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 32103551-32113550 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121793579 5273 Angiosperm Singleton cluster - no MSA
122052969 5267 Panicoideae Singleton cluster - no MSA
124352860 5269 Grass Singleton cluster - no MSA
121064758 5274 Embryophyte Singleton cluster - no MSA
123104427 5275 Viridiplantae Singleton cluster - no MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.706       High
cufflinks 3.124       High
cufflinks 0.868       Low
cufflinks 0.847       Low
cufflinks 0.826       Low
cufflinks 3.071       High
cufflinks 2.027        
cufflinks 2.095        
cufflinks 0.922        
cufflinks 3.024       High
cufflinks 2.44        
cufflinks 0.947        
cufflinks 1.749        
cufflinks 0.881       Low
cufflinks 1.354        
cufflinks 2.746       High
cufflinks 1.5        
cufflinks 1.838        
cufflinks 0.694       Low
cufflinks 1.218        

0 Strain