Gene : Seita.2G216800 S. italica v2.2
Defline:  (1 of 1) PTHR11972//PTHR11972:SF80 - NADPH OXIDASE Genomic Order:  2168
Name:  ? Seita.2G216800 Secondary Identifier:  ? PAC:32719265
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G216800 0.5kb upstream 0.5kb upstream 11032 true scaffold_2: 31859523-31870554 Setaria italica
Seita.2G216800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 31859523-31860022 Setaria italica
Seita.2G216800 0.5kb downstream 0.5kb downstream 11032 true scaffold_2: 31860023-31871054 Setaria italica
Seita.2G216800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 31870555-31871054 Setaria italica
Seita.2G216800 1.0kb upstream 1.0kb upstream 11532 true scaffold_2: 31859023-31870554 Setaria italica
Seita.2G216800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 31859023-31860022 Setaria italica
Seita.2G216800 1.0kb downstream 1.0kb downstream 11532 true scaffold_2: 31860023-31871554 Setaria italica
Seita.2G216800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 31870555-31871554 Setaria italica
Seita.2G216800 2.0kb upstream 2.0kb upstream 12532 true scaffold_2: 31858023-31870554 Setaria italica
Seita.2G216800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 31858023-31860022 Setaria italica
Seita.2G216800 2.0kb downstream 2.0kb downstream 12532 true scaffold_2: 31860023-31872554 Setaria italica
Seita.2G216800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 31870555-31872554 Setaria italica
Seita.2G216800 5.0kb upstream 5.0kb upstream 15532 true scaffold_2: 31855023-31870554 Setaria italica
Seita.2G216800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 31855023-31860022 Setaria italica
Seita.2G216800 5.0kb downstream 5.0kb downstream 15532 true scaffold_2: 31860023-31875554 Setaria italica
Seita.2G216800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 31870555-31875554 Setaria italica
Seita.2G216800 10.0kb upstream 10.0kb upstream 20532 true scaffold_2: 31850023-31870554 Setaria italica
Seita.2G216800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 31850023-31860022 Setaria italica
Seita.2G216800 10.0kb downstream 10.0kb downstream 20532 true scaffold_2: 31860023-31880554 Setaria italica
Seita.2G216800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 31870555-31880554 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182570 5267 Panicoideae View MSA
124586507 5269 Grass View MSA
122049816 5273 Angiosperm View MSA
121350202 5274 Embryophyte View MSA
123427915 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.143        
cufflinks 3.811       High
cufflinks 0.488       Low
cufflinks 0.56       Low
cufflinks 0.759        
cufflinks 5.512       High
cufflinks 1.509        
cufflinks 1.22        
cufflinks 1.896        
cufflinks 1.386        
cufflinks 1.713        
cufflinks 1.817        
cufflinks 2.348        
cufflinks 0.361       Low
cufflinks 2.41        
cufflinks 0.99        
cufflinks 1.423        
cufflinks 0.556       Low
cufflinks 0.314       Low
cufflinks 2.171        

0 Strain