Gene : Seita.2G220800 S. italica v2.2
Defline:  (1 of 1) 2.7.6.5//3.2.1.37//3.2.1.55 - GTP diphosphokinase / Stringent factor // Xylan 1,4-beta-xylosidase / Xylobiase // Non-reducing end alpha-L-arabinofuranosidase / Arabinosidase Genomic Order:  2208
Name:  ? Seita.2G220800 Secondary Identifier:  ? PAC:32723472
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G220800 0.5kb upstream 0.5kb upstream 4575 true scaffold_2: 32233435-32238009 Setaria italica
Seita.2G220800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 32233435-32233934 Setaria italica
Seita.2G220800 0.5kb downstream 0.5kb downstream 4575 true scaffold_2: 32233935-32238509 Setaria italica
Seita.2G220800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 32238010-32238509 Setaria italica
Seita.2G220800 1.0kb upstream 1.0kb upstream 5075 true scaffold_2: 32232935-32238009 Setaria italica
Seita.2G220800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 32232935-32233934 Setaria italica
Seita.2G220800 1.0kb downstream 1.0kb downstream 5075 true scaffold_2: 32233935-32239009 Setaria italica
Seita.2G220800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 32238010-32239009 Setaria italica
Seita.2G220800 2.0kb upstream 2.0kb upstream 6075 true scaffold_2: 32231935-32238009 Setaria italica
Seita.2G220800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 32231935-32233934 Setaria italica
Seita.2G220800 2.0kb downstream 2.0kb downstream 6075 true scaffold_2: 32233935-32240009 Setaria italica
Seita.2G220800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 32238010-32240009 Setaria italica
Seita.2G220800 5.0kb upstream 5.0kb upstream 9075 true scaffold_2: 32228935-32238009 Setaria italica
Seita.2G220800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 32228935-32233934 Setaria italica
Seita.2G220800 5.0kb downstream 5.0kb downstream 9075 true scaffold_2: 32233935-32243009 Setaria italica
Seita.2G220800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 32238010-32243009 Setaria italica
Seita.2G220800 10.0kb upstream 10.0kb upstream 14075 true scaffold_2: 32223935-32238009 Setaria italica
Seita.2G220800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 32223935-32233934 Setaria italica
Seita.2G220800 10.0kb downstream 10.0kb downstream 14075 true scaffold_2: 32233935-32248009 Setaria italica
Seita.2G220800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 32238010-32248009 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196555 5267 Panicoideae View MSA
124576636 5269 Grass View MSA
122044078 5273 Angiosperm View MSA
121346145 5274 Embryophyte View MSA
123428478 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.174        
cufflinks 9.491        
cufflinks 34.811     High High
cufflinks 23.853     High  
cufflinks 13.302     High  
cufflinks 8.772        
cufflinks 14.807     High  
cufflinks 6.812       Low
cufflinks 11.119        
cufflinks 9.152        
cufflinks 13.615     High  
cufflinks 10.814        
cufflinks 14.263     High  
cufflinks 60.514     High High
cufflinks 21.519     High  
cufflinks 7.558       Low
cufflinks 11.771        
cufflinks 19.551     High  
cufflinks 26.481     High High
cufflinks 8.908        

0 Strain