Gene : Seita.2G227500 S. italica v2.2
Defline:  (1 of 2) PTHR10799:SF577 - PROTEIN TAF-3, ISOFORM A Genomic Order:  2275
Name:  ? Seita.2G227500 Secondary Identifier:  ? PAC:32723147
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G227500 0.5kb upstream 0.5kb upstream 10412 true scaffold_2: 32939341-32949752 Setaria italica
Seita.2G227500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 32939341-32939840 Setaria italica
Seita.2G227500 0.5kb downstream 0.5kb downstream 10412 true scaffold_2: 32939841-32950252 Setaria italica
Seita.2G227500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 32949753-32950252 Setaria italica
Seita.2G227500 1.0kb upstream 1.0kb upstream 10912 true scaffold_2: 32938841-32949752 Setaria italica
Seita.2G227500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 32938841-32939840 Setaria italica
Seita.2G227500 1.0kb downstream 1.0kb downstream 10912 true scaffold_2: 32939841-32950752 Setaria italica
Seita.2G227500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 32949753-32950752 Setaria italica
Seita.2G227500 2.0kb upstream 2.0kb upstream 11912 true scaffold_2: 32937841-32949752 Setaria italica
Seita.2G227500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 32937841-32939840 Setaria italica
Seita.2G227500 2.0kb downstream 2.0kb downstream 11912 true scaffold_2: 32939841-32951752 Setaria italica
Seita.2G227500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 32949753-32951752 Setaria italica
Seita.2G227500 5.0kb upstream 5.0kb upstream 14912 true scaffold_2: 32934841-32949752 Setaria italica
Seita.2G227500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 32934841-32939840 Setaria italica
Seita.2G227500 5.0kb downstream 5.0kb downstream 14912 true scaffold_2: 32939841-32954752 Setaria italica
Seita.2G227500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 32949753-32954752 Setaria italica
Seita.2G227500 10.0kb upstream 10.0kb upstream 19912 true scaffold_2: 32929841-32949752 Setaria italica
Seita.2G227500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 32929841-32939840 Setaria italica
Seita.2G227500 10.0kb downstream 10.0kb downstream 19912 true scaffold_2: 32939841-32959752 Setaria italica
Seita.2G227500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 32949753-32959752 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122063024 5267 Panicoideae View MSA
124362550 5269 Grass View MSA
122044493 5273 Angiosperm View MSA
121349128 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.65     High High
cufflinks 16.801     High  
cufflinks 17.782     High High
cufflinks 15.388     High  
cufflinks 14.047     High  
cufflinks 18.302     High High
cufflinks 14.576     High  
cufflinks 8.909       Low
cufflinks 12.889     High  
cufflinks 5.476       Low
cufflinks 13.898     High  
cufflinks 9.989        
cufflinks 11.982        
cufflinks 12.582        
cufflinks 13.399        
cufflinks 15.234     High  
cufflinks 7.603       Low
cufflinks 14.06     High  
cufflinks 11.524     High  
cufflinks 10.572        

0 Strain