Gene : Seita.2G228200 S. italica v2.2
Defline:  (1 of 5) PTHR18952:SF100 - ALPHA CARBONIC ANHYDRASE 5 Genomic Order:  2282
Name:  ? Seita.2G228200 Secondary Identifier:  ? PAC:32719723
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CYANCAT-PWY Setaria italica pathologic  
Sitalica PWY-241 Setaria italica pathologic  
Sitalica PWY-7115 Setaria italica pathologic  
Sitalica PWY-7117 Setaria italica pathologic  
Sitalica PWYQT-4429 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G228200 0.5kb upstream 0.5kb upstream 2036 true scaffold_2: 33024840-33026875 Setaria italica
Seita.2G228200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 33026376-33026875 Setaria italica
Seita.2G228200 0.5kb downstream 0.5kb downstream 2036 true scaffold_2: 33024340-33026375 Setaria italica
Seita.2G228200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 33024340-33024839 Setaria italica
Seita.2G228200 1.0kb upstream 1.0kb upstream 2536 true scaffold_2: 33024840-33027375 Setaria italica
Seita.2G228200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 33026376-33027375 Setaria italica
Seita.2G228200 1.0kb downstream 1.0kb downstream 2536 true scaffold_2: 33023840-33026375 Setaria italica
Seita.2G228200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 33023840-33024839 Setaria italica
Seita.2G228200 2.0kb upstream 2.0kb upstream 3536 true scaffold_2: 33024840-33028375 Setaria italica
Seita.2G228200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 33026376-33028375 Setaria italica
Seita.2G228200 2.0kb downstream 2.0kb downstream 3536 true scaffold_2: 33022840-33026375 Setaria italica
Seita.2G228200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 33022840-33024839 Setaria italica
Seita.2G228200 5.0kb upstream 5.0kb upstream 6536 true scaffold_2: 33024840-33031375 Setaria italica
Seita.2G228200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 33026376-33031375 Setaria italica
Seita.2G228200 5.0kb downstream 5.0kb downstream 6536 true scaffold_2: 33019840-33026375 Setaria italica
Seita.2G228200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 33019840-33024839 Setaria italica
Seita.2G228200 10.0kb upstream 10.0kb upstream 11536 true scaffold_2: 33024840-33036375 Setaria italica
Seita.2G228200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 33026376-33036375 Setaria italica
Seita.2G228200 10.0kb downstream 10.0kb downstream 11536 true scaffold_2: 33014840-33026375 Setaria italica
Seita.2G228200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 33014840-33024839 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995953 5273 Angiosperm View MSA
122189018 5267 Panicoideae View MSA
124590272 5269 Grass View MSA
121351630 5274 Embryophyte View MSA
123428273 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain