Gene : Seita.2G231500 S. italica v2.2
Defline:  (1 of 3) 1.1.1.141 - 15-hydroxyprostaglandin dehydrogenase (NAD(+)) / 15-hydroxyprostaglandin dehydrogenase Genomic Order:  2315
Name:  ? Seita.2G231500 Secondary Identifier:  ? PAC:32720055
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G231500 0.5kb upstream 0.5kb upstream 10201 true scaffold_2: 33398602-33408802 Setaria italica
Seita.2G231500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 33398602-33399101 Setaria italica
Seita.2G231500 0.5kb downstream 0.5kb downstream 10201 true scaffold_2: 33399102-33409302 Setaria italica
Seita.2G231500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 33408803-33409302 Setaria italica
Seita.2G231500 1.0kb upstream 1.0kb upstream 10701 true scaffold_2: 33398102-33408802 Setaria italica
Seita.2G231500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 33398102-33399101 Setaria italica
Seita.2G231500 1.0kb downstream 1.0kb downstream 10701 true scaffold_2: 33399102-33409802 Setaria italica
Seita.2G231500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 33408803-33409802 Setaria italica
Seita.2G231500 2.0kb upstream 2.0kb upstream 11701 true scaffold_2: 33397102-33408802 Setaria italica
Seita.2G231500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 33397102-33399101 Setaria italica
Seita.2G231500 2.0kb downstream 2.0kb downstream 11701 true scaffold_2: 33399102-33410802 Setaria italica
Seita.2G231500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 33408803-33410802 Setaria italica
Seita.2G231500 5.0kb upstream 5.0kb upstream 14701 true scaffold_2: 33394102-33408802 Setaria italica
Seita.2G231500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 33394102-33399101 Setaria italica
Seita.2G231500 5.0kb downstream 5.0kb downstream 14701 true scaffold_2: 33399102-33413802 Setaria italica
Seita.2G231500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 33408803-33413802 Setaria italica
Seita.2G231500 10.0kb upstream 10.0kb upstream 19701 true scaffold_2: 33389102-33408802 Setaria italica
Seita.2G231500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 33389102-33399101 Setaria italica
Seita.2G231500 10.0kb downstream 10.0kb downstream 19701 true scaffold_2: 33399102-33418802 Setaria italica
Seita.2G231500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 33408803-33418802 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026347 5273 Angiosperm View MSA
122196715 5267 Panicoideae View MSA
124584199 5269 Grass View MSA
121346916 5274 Embryophyte View MSA
123424584 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.6       High
cufflinks 5.533        
cufflinks 7.918       High
cufflinks 8.414       High
cufflinks 6.648        
cufflinks 4.829        
cufflinks 4.021       Low
cufflinks 5.36        
cufflinks 5.041        
cufflinks 4.379        
cufflinks 6.817        
cufflinks 4.69        
cufflinks 4.123       Low
cufflinks 7.108        
cufflinks 4.674        
cufflinks 5.35        
cufflinks 4.022       Low
cufflinks 7.845       High
cufflinks 5.771        
cufflinks 3.343       Low

0 Strain