Gene : Seita.2G228800 S. italica v2.2
Defline:  (1 of 1) KOG2812 - Uncharacterized conserved protein Genomic Order:  2288
Name:  ? Seita.2G228800 Secondary Identifier:  ? PAC:32722431
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G228800 0.5kb upstream 0.5kb upstream 2525 true scaffold_2: 33115070-33117594 Setaria italica
Seita.2G228800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 33115070-33115569 Setaria italica
Seita.2G228800 0.5kb downstream 0.5kb downstream 2525 true scaffold_2: 33115570-33118094 Setaria italica
Seita.2G228800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 33117595-33118094 Setaria italica
Seita.2G228800 1.0kb upstream 1.0kb upstream 3025 true scaffold_2: 33114570-33117594 Setaria italica
Seita.2G228800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 33114570-33115569 Setaria italica
Seita.2G228800 1.0kb downstream 1.0kb downstream 3025 true scaffold_2: 33115570-33118594 Setaria italica
Seita.2G228800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 33117595-33118594 Setaria italica
Seita.2G228800 2.0kb upstream 2.0kb upstream 4025 true scaffold_2: 33113570-33117594 Setaria italica
Seita.2G228800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 33113570-33115569 Setaria italica
Seita.2G228800 2.0kb downstream 2.0kb downstream 4025 true scaffold_2: 33115570-33119594 Setaria italica
Seita.2G228800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 33117595-33119594 Setaria italica
Seita.2G228800 5.0kb upstream 5.0kb upstream 7025 true scaffold_2: 33110570-33117594 Setaria italica
Seita.2G228800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 33110570-33115569 Setaria italica
Seita.2G228800 5.0kb downstream 5.0kb downstream 7025 true scaffold_2: 33115570-33122594 Setaria italica
Seita.2G228800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 33117595-33122594 Setaria italica
Seita.2G228800 10.0kb upstream 10.0kb upstream 12025 true scaffold_2: 33105570-33117594 Setaria italica
Seita.2G228800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 33105570-33115569 Setaria italica
Seita.2G228800 10.0kb downstream 10.0kb downstream 12025 true scaffold_2: 33115570-33127594 Setaria italica
Seita.2G228800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 33117595-33127594 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180120 5267 Panicoideae View MSA
124568660 5269 Grass View MSA
122046016 5273 Angiosperm View MSA
121348345 5274 Embryophyte View MSA
123426799 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.636     High High
cufflinks 28.54     High High
cufflinks 18.7     High  
cufflinks 14.222     High Low
cufflinks 15.439     High Low
cufflinks 28.01     High High
cufflinks 20.408     High  
cufflinks 18.298     High  
cufflinks 14.594     High Low
cufflinks 16.24     High  
cufflinks 25.267     High  
cufflinks 26.383     High  
cufflinks 15.311     High Low
cufflinks 16.573     High  
cufflinks 21.714     High  
cufflinks 26.147     High  
cufflinks 26.276     High  
cufflinks 37.849     High High
cufflinks 18.397     High  
cufflinks 20.748     High  

0 Strain