Gene : Seita.2G231600 S. italica v2.2
Defline:  (1 of 3) 1.1.1.141 - 15-hydroxyprostaglandin dehydrogenase (NAD(+)) / 15-hydroxyprostaglandin dehydrogenase Genomic Order:  2316
Name:  ? Seita.2G231600 Secondary Identifier:  ? PAC:32723177
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G231600 0.5kb upstream 0.5kb upstream 12617 true scaffold_2: 33414434-33427050 Setaria italica
Seita.2G231600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 33414434-33414933 Setaria italica
Seita.2G231600 0.5kb downstream 0.5kb downstream 12617 true scaffold_2: 33414934-33427550 Setaria italica
Seita.2G231600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 33427051-33427550 Setaria italica
Seita.2G231600 1.0kb upstream 1.0kb upstream 13117 true scaffold_2: 33413934-33427050 Setaria italica
Seita.2G231600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 33413934-33414933 Setaria italica
Seita.2G231600 1.0kb downstream 1.0kb downstream 13117 true scaffold_2: 33414934-33428050 Setaria italica
Seita.2G231600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 33427051-33428050 Setaria italica
Seita.2G231600 2.0kb upstream 2.0kb upstream 14117 true scaffold_2: 33412934-33427050 Setaria italica
Seita.2G231600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 33412934-33414933 Setaria italica
Seita.2G231600 2.0kb downstream 2.0kb downstream 14117 true scaffold_2: 33414934-33429050 Setaria italica
Seita.2G231600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 33427051-33429050 Setaria italica
Seita.2G231600 5.0kb upstream 5.0kb upstream 17117 true scaffold_2: 33409934-33427050 Setaria italica
Seita.2G231600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 33409934-33414933 Setaria italica
Seita.2G231600 5.0kb downstream 5.0kb downstream 17117 true scaffold_2: 33414934-33432050 Setaria italica
Seita.2G231600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 33427051-33432050 Setaria italica
Seita.2G231600 10.0kb upstream 10.0kb upstream 22117 true scaffold_2: 33404934-33427050 Setaria italica
Seita.2G231600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 33404934-33414933 Setaria italica
Seita.2G231600 10.0kb downstream 10.0kb downstream 22117 true scaffold_2: 33414934-33437050 Setaria italica
Seita.2G231600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 33427051-33437050 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026347 5273 Angiosperm View MSA
122196715 5267 Panicoideae View MSA
124584199 5269 Grass View MSA
121346916 5274 Embryophyte View MSA
123424584 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.958        
cufflinks 5.15        
cufflinks 3.429        
cufflinks 2.7       Low
cufflinks 2.588       Low
cufflinks 4.55        
cufflinks 3.415        
cufflinks 3.719        
cufflinks 3.457        
cufflinks 3.117        
cufflinks 5.028        
cufflinks 4.69        
cufflinks 6.006       High
cufflinks 4.23        
cufflinks 7.723       High
cufflinks 2.758       Low
cufflinks 5.589       High
cufflinks 2.248       Low
cufflinks 2.313       Low
cufflinks 5.175        

0 Strain