Gene : Seita.2G232700 S. italica v2.2
Defline:  (1 of 2) PTHR11093:SF2 - RUVB-LIKE 2 Genomic Order:  2327
Name:  ? Seita.2G232700 Secondary Identifier:  ? PAC:32719697
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G232700 0.5kb upstream 0.5kb upstream 4085 true scaffold_2: 33518844-33522928 Setaria italica
Seita.2G232700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 33522429-33522928 Setaria italica
Seita.2G232700 0.5kb downstream 0.5kb downstream 4085 true scaffold_2: 33518344-33522428 Setaria italica
Seita.2G232700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 33518344-33518843 Setaria italica
Seita.2G232700 1.0kb upstream 1.0kb upstream 4585 true scaffold_2: 33518844-33523428 Setaria italica
Seita.2G232700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 33522429-33523428 Setaria italica
Seita.2G232700 1.0kb downstream 1.0kb downstream 4585 true scaffold_2: 33517844-33522428 Setaria italica
Seita.2G232700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 33517844-33518843 Setaria italica
Seita.2G232700 2.0kb upstream 2.0kb upstream 5585 true scaffold_2: 33518844-33524428 Setaria italica
Seita.2G232700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 33522429-33524428 Setaria italica
Seita.2G232700 2.0kb downstream 2.0kb downstream 5585 true scaffold_2: 33516844-33522428 Setaria italica
Seita.2G232700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 33516844-33518843 Setaria italica
Seita.2G232700 5.0kb upstream 5.0kb upstream 8585 true scaffold_2: 33518844-33527428 Setaria italica
Seita.2G232700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 33522429-33527428 Setaria italica
Seita.2G232700 5.0kb downstream 5.0kb downstream 8585 true scaffold_2: 33513844-33522428 Setaria italica
Seita.2G232700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 33513844-33518843 Setaria italica
Seita.2G232700 10.0kb upstream 10.0kb upstream 13585 true scaffold_2: 33518844-33532428 Setaria italica
Seita.2G232700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 33522429-33532428 Setaria italica
Seita.2G232700 10.0kb downstream 10.0kb downstream 13585 true scaffold_2: 33508844-33522428 Setaria italica
Seita.2G232700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 33508844-33518843 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122115971 5267 Panicoideae View MSA
124584257 5269 Grass View MSA
122045825 5273 Angiosperm View MSA
121346627 5274 Embryophyte View MSA
123423891 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.428        
cufflinks 14.038     High High
cufflinks 5.504        
cufflinks 3.605       Low
cufflinks 4.26       Low
cufflinks 15.58     High High
cufflinks 5.956        
cufflinks 6.783        
cufflinks 7.002        
cufflinks 9.999        
cufflinks 8.808        
cufflinks 9.405        
cufflinks 7.793        
cufflinks 7.27        
cufflinks 10.017        
cufflinks 6.656        
cufflinks 11.59        
cufflinks 10.681        
cufflinks 3.432       Low
cufflinks 9.547        

0 Strain