Gene : Seita.2G236200 S. italica v2.2
Defline:  (1 of 20) PF02893 - GRAM domain (GRAM) Genomic Order:  2362
Name:  ? Seita.2G236200 Secondary Identifier:  ? PAC:32723046
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G236200 0.5kb upstream 0.5kb upstream 1991 true scaffold_2: 34024982-34026972 Setaria italica
Seita.2G236200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 34024982-34025481 Setaria italica
Seita.2G236200 0.5kb downstream 0.5kb downstream 1991 true scaffold_2: 34025482-34027472 Setaria italica
Seita.2G236200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 34026973-34027472 Setaria italica
Seita.2G236200 1.0kb upstream 1.0kb upstream 2491 true scaffold_2: 34024482-34026972 Setaria italica
Seita.2G236200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 34024482-34025481 Setaria italica
Seita.2G236200 1.0kb downstream 1.0kb downstream 2491 true scaffold_2: 34025482-34027972 Setaria italica
Seita.2G236200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 34026973-34027972 Setaria italica
Seita.2G236200 2.0kb upstream 2.0kb upstream 3491 true scaffold_2: 34023482-34026972 Setaria italica
Seita.2G236200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 34023482-34025481 Setaria italica
Seita.2G236200 2.0kb downstream 2.0kb downstream 3491 true scaffold_2: 34025482-34028972 Setaria italica
Seita.2G236200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 34026973-34028972 Setaria italica
Seita.2G236200 5.0kb upstream 5.0kb upstream 6491 true scaffold_2: 34020482-34026972 Setaria italica
Seita.2G236200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 34020482-34025481 Setaria italica
Seita.2G236200 5.0kb downstream 5.0kb downstream 6491 true scaffold_2: 34025482-34031972 Setaria italica
Seita.2G236200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 34026973-34031972 Setaria italica
Seita.2G236200 10.0kb upstream 10.0kb upstream 11491 true scaffold_2: 34015482-34026972 Setaria italica
Seita.2G236200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 34015482-34025481 Setaria italica
Seita.2G236200 10.0kb downstream 10.0kb downstream 11491 true scaffold_2: 34025482-34036972 Setaria italica
Seita.2G236200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 34026973-34036972 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180278 5267 Panicoideae View MSA
124585316 5269 Grass View MSA
122050342 5273 Angiosperm View MSA
121350470 5274 Embryophyte View MSA
123381748 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.531        
cufflinks 0.972        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.517        
cufflinks 0.195        
cufflinks 0.204        
cufflinks 0.304        
cufflinks 2.089       High
cufflinks 0.921        
cufflinks 0.462        
cufflinks 1.346       High
cufflinks 0.061     Low Low
cufflinks 0.846        
cufflinks 0.052     Low Low
cufflinks 0.792        
cufflinks 0.129        
cufflinks 0.045     Low Low
cufflinks 0.677        

0 Strain