Gene : Seita.2G235600 S. italica v2.2
Defline:  (1 of 1) PTHR31100:SF1 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 17-RELATED Genomic Order:  2356
Name:  ? Seita.2G235600 Secondary Identifier:  ? PAC:32718791
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G235600 0.5kb upstream 0.5kb upstream 1586 true scaffold_2: 33814003-33815588 Setaria italica
Seita.2G235600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 33815089-33815588 Setaria italica
Seita.2G235600 0.5kb downstream 0.5kb downstream 1586 true scaffold_2: 33813503-33815088 Setaria italica
Seita.2G235600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 33813503-33814002 Setaria italica
Seita.2G235600 1.0kb upstream 1.0kb upstream 2086 true scaffold_2: 33814003-33816088 Setaria italica
Seita.2G235600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 33815089-33816088 Setaria italica
Seita.2G235600 1.0kb downstream 1.0kb downstream 2086 true scaffold_2: 33813003-33815088 Setaria italica
Seita.2G235600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 33813003-33814002 Setaria italica
Seita.2G235600 2.0kb upstream 2.0kb upstream 3086 true scaffold_2: 33814003-33817088 Setaria italica
Seita.2G235600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 33815089-33817088 Setaria italica
Seita.2G235600 2.0kb downstream 2.0kb downstream 3086 true scaffold_2: 33812003-33815088 Setaria italica
Seita.2G235600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 33812003-33814002 Setaria italica
Seita.2G235600 5.0kb upstream 5.0kb upstream 6086 true scaffold_2: 33814003-33820088 Setaria italica
Seita.2G235600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 33815089-33820088 Setaria italica
Seita.2G235600 5.0kb downstream 5.0kb downstream 6086 true scaffold_2: 33809003-33815088 Setaria italica
Seita.2G235600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 33809003-33814002 Setaria italica
Seita.2G235600 10.0kb upstream 10.0kb upstream 11086 true scaffold_2: 33814003-33825088 Setaria italica
Seita.2G235600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 33815089-33825088 Setaria italica
Seita.2G235600 10.0kb downstream 10.0kb downstream 11086 true scaffold_2: 33804003-33815088 Setaria italica
Seita.2G235600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 33804003-33814002 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180097 5267 Panicoideae View MSA
124586532 5269 Grass View MSA
122046470 5273 Angiosperm View MSA
121310610 5274 Embryophyte View MSA
123348051 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.127       High
cufflinks 1.785        
cufflinks 0.041     Low  
cufflinks 0.025     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.544        
cufflinks 0.493        
cufflinks 0.722        
cufflinks 0.136        
cufflinks 1.997       High
cufflinks 1.755        
cufflinks 0.016     Low Low
cufflinks 0.062     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.936        
cufflinks 0.015     Low Low
cufflinks 2.024       High
cufflinks 0.035     Low Low
cufflinks 0.0     Not Expressed Not Expressed

0 Strain