Gene : Seita.2G160100 S. italica v2.2
Defline:  (1 of 2) PTHR10110:SF119 - SODIUM/HYDROGEN EXCHANGER 5-RELATED Genomic Order:  1601
Name:  ? Seita.2G160100 Secondary Identifier:  ? PAC:32722541
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G160100 0.5kb upstream 0.5kb upstream 3434 true scaffold_2: 23425190-23428623 Setaria italica
Seita.2G160100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 23425190-23425689 Setaria italica
Seita.2G160100 0.5kb downstream 0.5kb downstream 3434 true scaffold_2: 23425690-23429123 Setaria italica
Seita.2G160100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 23428624-23429123 Setaria italica
Seita.2G160100 1.0kb upstream 1.0kb upstream 3934 true scaffold_2: 23424690-23428623 Setaria italica
Seita.2G160100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 23424690-23425689 Setaria italica
Seita.2G160100 1.0kb downstream 1.0kb downstream 3934 true scaffold_2: 23425690-23429623 Setaria italica
Seita.2G160100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 23428624-23429623 Setaria italica
Seita.2G160100 2.0kb upstream 2.0kb upstream 4934 true scaffold_2: 23423690-23428623 Setaria italica
Seita.2G160100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 23423690-23425689 Setaria italica
Seita.2G160100 2.0kb downstream 2.0kb downstream 4934 true scaffold_2: 23425690-23430623 Setaria italica
Seita.2G160100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 23428624-23430623 Setaria italica
Seita.2G160100 5.0kb upstream 5.0kb upstream 7934 true scaffold_2: 23420690-23428623 Setaria italica
Seita.2G160100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 23420690-23425689 Setaria italica
Seita.2G160100 5.0kb downstream 5.0kb downstream 7934 true scaffold_2: 23425690-23433623 Setaria italica
Seita.2G160100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 23428624-23433623 Setaria italica
Seita.2G160100 10.0kb upstream 10.0kb upstream 12934 true scaffold_2: 23415690-23428623 Setaria italica
Seita.2G160100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 23415690-23425689 Setaria italica
Seita.2G160100 10.0kb downstream 10.0kb downstream 12934 true scaffold_2: 23425690-23438623 Setaria italica
Seita.2G160100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 23428624-23438623 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122053041 5267 Panicoideae Singleton cluster - no MSA
124352932 5269 Grass Singleton cluster - no MSA
122050425 5273 Angiosperm View MSA
121351744 5274 Embryophyte View MSA
123382303 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.605        
cufflinks 5.29        
cufflinks 7.056        
cufflinks 5.985        
cufflinks 3.933       Low
cufflinks 6.772        
cufflinks 4.708        
cufflinks 3.275       Low
cufflinks 3.068       Low
cufflinks 9.909       High
cufflinks 5.079        
cufflinks 5.018        
cufflinks 7.245        
cufflinks 5.938        
cufflinks 6.204        
cufflinks 5.65        
cufflinks 4.675        
cufflinks 7.891       High
cufflinks 5.129        
cufflinks 4.846        

0 Strain