Gene : Seita.2G162900 S. italica v2.2
Defline:  (1 of 17) KOG0087 - GTPase Rab11/YPT3, small G protein superfamily Genomic Order:  1629
Name:  ? Seita.2G162900 Secondary Identifier:  ? PAC:32721513
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G162900 0.5kb upstream 0.5kb upstream 4188 true scaffold_2: 23979016-23983203 Setaria italica
Seita.2G162900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 23982704-23983203 Setaria italica
Seita.2G162900 0.5kb downstream 0.5kb downstream 4188 true scaffold_2: 23978516-23982703 Setaria italica
Seita.2G162900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 23978516-23979015 Setaria italica
Seita.2G162900 1.0kb upstream 1.0kb upstream 4688 true scaffold_2: 23979016-23983703 Setaria italica
Seita.2G162900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 23982704-23983703 Setaria italica
Seita.2G162900 1.0kb downstream 1.0kb downstream 4688 true scaffold_2: 23978016-23982703 Setaria italica
Seita.2G162900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 23978016-23979015 Setaria italica
Seita.2G162900 2.0kb upstream 2.0kb upstream 5688 true scaffold_2: 23979016-23984703 Setaria italica
Seita.2G162900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 23982704-23984703 Setaria italica
Seita.2G162900 2.0kb downstream 2.0kb downstream 5688 true scaffold_2: 23977016-23982703 Setaria italica
Seita.2G162900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 23977016-23979015 Setaria italica
Seita.2G162900 5.0kb upstream 5.0kb upstream 8688 true scaffold_2: 23979016-23987703 Setaria italica
Seita.2G162900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 23982704-23987703 Setaria italica
Seita.2G162900 5.0kb downstream 5.0kb downstream 8688 true scaffold_2: 23974016-23982703 Setaria italica
Seita.2G162900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 23974016-23979015 Setaria italica
Seita.2G162900 10.0kb upstream 10.0kb upstream 13688 true scaffold_2: 23979016-23992703 Setaria italica
Seita.2G162900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 23982704-23992703 Setaria italica
Seita.2G162900 10.0kb downstream 10.0kb downstream 13688 true scaffold_2: 23969016-23982703 Setaria italica
Seita.2G162900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 23969016-23979015 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187565 5267 Panicoideae View MSA
124578948 5269 Grass View MSA
122041554 5273 Angiosperm View MSA
121351595 5274 Embryophyte View MSA
123426852 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.415        
cufflinks 1.623        
cufflinks 1.116        
cufflinks 0.832        
cufflinks 0.902        
cufflinks 1.755        
cufflinks 0.794        
cufflinks 0.77        
cufflinks 0.414       Low
cufflinks 2.38        
cufflinks 1.818        
cufflinks 6.788       High
cufflinks 4.994       High
cufflinks 2.027        
cufflinks 6.577       High
cufflinks 0.497       Low
cufflinks 6.545       High
cufflinks 0.502       Low
cufflinks 1.217        
cufflinks 5.776       High

0 Strain