Gene : Seita.2G164500 S. italica v2.2
Defline:  (1 of 2) PTHR31906:SF5 - PLASTID-LIPID-ASSOCIATED PROTEIN 3, CHLOROPLASTIC-RELATED Genomic Order:  1645
Name:  ? Seita.2G164500 Secondary Identifier:  ? PAC:32721735
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G164500 0.5kb upstream 0.5kb upstream 3810 true scaffold_2: 24234755-24238564 Setaria italica
Seita.2G164500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 24234755-24235254 Setaria italica
Seita.2G164500 0.5kb downstream 0.5kb downstream 3810 true scaffold_2: 24235255-24239064 Setaria italica
Seita.2G164500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 24238565-24239064 Setaria italica
Seita.2G164500 1.0kb upstream 1.0kb upstream 4310 true scaffold_2: 24234255-24238564 Setaria italica
Seita.2G164500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 24234255-24235254 Setaria italica
Seita.2G164500 1.0kb downstream 1.0kb downstream 4310 true scaffold_2: 24235255-24239564 Setaria italica
Seita.2G164500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 24238565-24239564 Setaria italica
Seita.2G164500 2.0kb upstream 2.0kb upstream 5310 true scaffold_2: 24233255-24238564 Setaria italica
Seita.2G164500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 24233255-24235254 Setaria italica
Seita.2G164500 2.0kb downstream 2.0kb downstream 5310 true scaffold_2: 24235255-24240564 Setaria italica
Seita.2G164500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 24238565-24240564 Setaria italica
Seita.2G164500 5.0kb upstream 5.0kb upstream 8310 true scaffold_2: 24230255-24238564 Setaria italica
Seita.2G164500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 24230255-24235254 Setaria italica
Seita.2G164500 5.0kb downstream 5.0kb downstream 8310 true scaffold_2: 24235255-24243564 Setaria italica
Seita.2G164500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 24238565-24243564 Setaria italica
Seita.2G164500 10.0kb upstream 10.0kb upstream 13310 true scaffold_2: 24225255-24238564 Setaria italica
Seita.2G164500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 24225255-24235254 Setaria italica
Seita.2G164500 10.0kb downstream 10.0kb downstream 13310 true scaffold_2: 24235255-24248564 Setaria italica
Seita.2G164500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 24238565-24248564 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184394 5267 Panicoideae View MSA
124587187 5269 Grass View MSA
122048215 5273 Angiosperm View MSA
121346450 5274 Embryophyte View MSA
123427802 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.602        
cufflinks 4.848       Low
cufflinks 79.419     High High
cufflinks 98.091     High High
cufflinks 60.316     High High
cufflinks 5.46       Low
cufflinks 14.203     High  
cufflinks 47.093     High  
cufflinks 12.404        
cufflinks 18.381     High  
cufflinks 7.562        
cufflinks 8.664        
cufflinks 9.882        
cufflinks 61.19     High High
cufflinks 8.847        
cufflinks 24.41     High  
cufflinks 10.096        
cufflinks 36.754     High  
cufflinks 132.291     High High
cufflinks 6.743       Low

0 Strain