Gene : Seita.2G163700 S. italica v2.2
Defline:  (1 of 2) PTHR12231:SF111 - MATRIX-REMODELING-ASSOCIATED PROTEIN 8 Genomic Order:  1637
Name:  ? Seita.2G163700 Secondary Identifier:  ? PAC:32720970
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G163700 0.5kb upstream 0.5kb upstream 3825 true scaffold_2: 24136149-24139973 Setaria italica
Seita.2G163700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 24139474-24139973 Setaria italica
Seita.2G163700 0.5kb downstream 0.5kb downstream 3825 true scaffold_2: 24135649-24139473 Setaria italica
Seita.2G163700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 24135649-24136148 Setaria italica
Seita.2G163700 1.0kb upstream 1.0kb upstream 4325 true scaffold_2: 24136149-24140473 Setaria italica
Seita.2G163700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 24139474-24140473 Setaria italica
Seita.2G163700 1.0kb downstream 1.0kb downstream 4325 true scaffold_2: 24135149-24139473 Setaria italica
Seita.2G163700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 24135149-24136148 Setaria italica
Seita.2G163700 2.0kb upstream 2.0kb upstream 5325 true scaffold_2: 24136149-24141473 Setaria italica
Seita.2G163700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 24139474-24141473 Setaria italica
Seita.2G163700 2.0kb downstream 2.0kb downstream 5325 true scaffold_2: 24134149-24139473 Setaria italica
Seita.2G163700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 24134149-24136148 Setaria italica
Seita.2G163700 5.0kb upstream 5.0kb upstream 8325 true scaffold_2: 24136149-24144473 Setaria italica
Seita.2G163700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 24139474-24144473 Setaria italica
Seita.2G163700 5.0kb downstream 5.0kb downstream 8325 true scaffold_2: 24131149-24139473 Setaria italica
Seita.2G163700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 24131149-24136148 Setaria italica
Seita.2G163700 10.0kb upstream 10.0kb upstream 13325 true scaffold_2: 24136149-24149473 Setaria italica
Seita.2G163700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 24139474-24149473 Setaria italica
Seita.2G163700 10.0kb downstream 10.0kb downstream 13325 true scaffold_2: 24126149-24139473 Setaria italica
Seita.2G163700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 24126149-24136148 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188599 5267 Panicoideae View MSA
124574956 5269 Grass View MSA
122046652 5273 Angiosperm View MSA
121347654 5274 Embryophyte View MSA
123380591 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.272        
cufflinks 9.845        
cufflinks 10.901     High  
cufflinks 10.915        
cufflinks 25.332     High  
cufflinks 8.989        
cufflinks 39.657     High High
cufflinks 42.811     High High
cufflinks 47.826     High High
cufflinks 1.826        
cufflinks 2.038        
cufflinks 0.188       Low
cufflinks 0.383       Low
cufflinks 13.441        
cufflinks 0.157       Low
cufflinks 14.072     High  
cufflinks 0.224       Low
cufflinks 1.215        
cufflinks 13.323     High  
cufflinks 0.279       Low

0 Strain