Gene : Seita.2G164200 S. italica v2.2
Defline:  (1 of 2) PTHR11452//PTHR11452:SF32 - ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE Genomic Order:  1642
Name:  ? Seita.2G164200 Secondary Identifier:  ? PAC:32721781
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1301 Setaria italica pathologic  
Sitalica PWY-6527 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G164200 0.5kb upstream 0.5kb upstream 4435 true scaffold_2: 24192095-24196529 Setaria italica
Seita.2G164200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 24196030-24196529 Setaria italica
Seita.2G164200 0.5kb downstream 0.5kb downstream 4435 true scaffold_2: 24191595-24196029 Setaria italica
Seita.2G164200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 24191595-24192094 Setaria italica
Seita.2G164200 1.0kb upstream 1.0kb upstream 4935 true scaffold_2: 24192095-24197029 Setaria italica
Seita.2G164200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 24196030-24197029 Setaria italica
Seita.2G164200 1.0kb downstream 1.0kb downstream 4935 true scaffold_2: 24191095-24196029 Setaria italica
Seita.2G164200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 24191095-24192094 Setaria italica
Seita.2G164200 2.0kb upstream 2.0kb upstream 5935 true scaffold_2: 24192095-24198029 Setaria italica
Seita.2G164200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 24196030-24198029 Setaria italica
Seita.2G164200 2.0kb downstream 2.0kb downstream 5935 true scaffold_2: 24190095-24196029 Setaria italica
Seita.2G164200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 24190095-24192094 Setaria italica
Seita.2G164200 5.0kb upstream 5.0kb upstream 8935 true scaffold_2: 24192095-24201029 Setaria italica
Seita.2G164200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 24196030-24201029 Setaria italica
Seita.2G164200 5.0kb downstream 5.0kb downstream 8935 true scaffold_2: 24187095-24196029 Setaria italica
Seita.2G164200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 24187095-24192094 Setaria italica
Seita.2G164200 10.0kb upstream 10.0kb upstream 13935 true scaffold_2: 24192095-24206029 Setaria italica
Seita.2G164200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 24196030-24206029 Setaria italica
Seita.2G164200 10.0kb downstream 10.0kb downstream 13935 true scaffold_2: 24182095-24196029 Setaria italica
Seita.2G164200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 24182095-24192094 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192526 5267 Panicoideae View MSA
124466351 5269 Grass View MSA
122048958 5273 Angiosperm View MSA
121347217 5274 Embryophyte View MSA
123428348 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.067     Low  
cufflinks 0.112     Low  
cufflinks 0.029     Low Low
cufflinks 0.03     Low Low
cufflinks 0.046     Low  
cufflinks 0.099     Low  
cufflinks 0.135        
cufflinks 0.092     Low  
cufflinks 0.013     Low Low
cufflinks 0.062     Low  
cufflinks 0.172        
cufflinks 0.337       High
cufflinks 0.196        
cufflinks 0.131        
cufflinks 0.354       High
cufflinks 0.046     Low  
cufflinks 0.349       High
cufflinks 0.065     Low  
cufflinks 0.023     Low Low
cufflinks 0.583       High

0 Strain