Gene : Seita.2G165800 S. italica v2.2
Defline:  (1 of 2) 1.1.1.3//2.7.2.4 - Aspartate kinase / Aspartokinase Genomic Order:  1658
Name:  ? Seita.2G165800 Secondary Identifier:  ? PAC:32720872
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica HOMOSERSYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica PWY-5097 Setaria italica pathologic  
Sitalica PWY-724 Setaria italica pathologic  
Sitalica THRESYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G165800 0.5kb upstream 0.5kb upstream 10659 true scaffold_2: 24567331-24577989 Setaria italica
Seita.2G165800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 24577490-24577989 Setaria italica
Seita.2G165800 0.5kb downstream 0.5kb downstream 10659 true scaffold_2: 24566831-24577489 Setaria italica
Seita.2G165800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 24566831-24567330 Setaria italica
Seita.2G165800 1.0kb upstream 1.0kb upstream 11159 true scaffold_2: 24567331-24578489 Setaria italica
Seita.2G165800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 24577490-24578489 Setaria italica
Seita.2G165800 1.0kb downstream 1.0kb downstream 11159 true scaffold_2: 24566331-24577489 Setaria italica
Seita.2G165800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 24566331-24567330 Setaria italica
Seita.2G165800 2.0kb upstream 2.0kb upstream 12159 true scaffold_2: 24567331-24579489 Setaria italica
Seita.2G165800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 24577490-24579489 Setaria italica
Seita.2G165800 2.0kb downstream 2.0kb downstream 12159 true scaffold_2: 24565331-24577489 Setaria italica
Seita.2G165800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 24565331-24567330 Setaria italica
Seita.2G165800 5.0kb upstream 5.0kb upstream 15159 true scaffold_2: 24567331-24582489 Setaria italica
Seita.2G165800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 24577490-24582489 Setaria italica
Seita.2G165800 5.0kb downstream 5.0kb downstream 15159 true scaffold_2: 24562331-24577489 Setaria italica
Seita.2G165800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 24562331-24567330 Setaria italica
Seita.2G165800 10.0kb upstream 10.0kb upstream 20159 true scaffold_2: 24567331-24587489 Setaria italica
Seita.2G165800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 24577490-24587489 Setaria italica
Seita.2G165800 10.0kb downstream 10.0kb downstream 20159 true scaffold_2: 24557331-24577489 Setaria italica
Seita.2G165800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 24557331-24567330 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180692 5267 Panicoideae View MSA
124568844 5269 Grass View MSA
122043013 5273 Angiosperm View MSA
121350238 5274 Embryophyte View MSA
123423775 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.468        
cufflinks 7.439        
cufflinks 3.512        
cufflinks 5.045        
cufflinks 7.88       High
cufflinks 6.163        
cufflinks 4.936        
cufflinks 5.35        
cufflinks 7.513        
cufflinks 1.854        
cufflinks 1.997        
cufflinks 4.754        
cufflinks 4.716        
cufflinks 1.787        
cufflinks 5.442        
cufflinks 1.515       Low
cufflinks 8.287       High
cufflinks 0.566       Low
cufflinks 1.658       Low
cufflinks 6.659        

0 Strain