Gene : Seita.2G168900 S. italica v2.2
Defline:  (1 of 17) PF00249//PF14379 - Myb-like DNA-binding domain (Myb_DNA-binding) // MYB-CC type transfactor, LHEQLE motif (Myb_CC_LHEQLE) Genomic Order:  1689
Name:  ? Seita.2G168900 Secondary Identifier:  ? PAC:32722769
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G168900 0.5kb upstream 0.5kb upstream 5496 true scaffold_2: 25172798-25178293 Setaria italica
Seita.2G168900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 25172798-25173297 Setaria italica
Seita.2G168900 0.5kb downstream 0.5kb downstream 5496 true scaffold_2: 25173298-25178793 Setaria italica
Seita.2G168900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 25178294-25178793 Setaria italica
Seita.2G168900 1.0kb upstream 1.0kb upstream 5996 true scaffold_2: 25172298-25178293 Setaria italica
Seita.2G168900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 25172298-25173297 Setaria italica
Seita.2G168900 1.0kb downstream 1.0kb downstream 5996 true scaffold_2: 25173298-25179293 Setaria italica
Seita.2G168900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 25178294-25179293 Setaria italica
Seita.2G168900 2.0kb upstream 2.0kb upstream 6996 true scaffold_2: 25171298-25178293 Setaria italica
Seita.2G168900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 25171298-25173297 Setaria italica
Seita.2G168900 2.0kb downstream 2.0kb downstream 6996 true scaffold_2: 25173298-25180293 Setaria italica
Seita.2G168900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 25178294-25180293 Setaria italica
Seita.2G168900 5.0kb upstream 5.0kb upstream 9996 true scaffold_2: 25168298-25178293 Setaria italica
Seita.2G168900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 25168298-25173297 Setaria italica
Seita.2G168900 5.0kb downstream 5.0kb downstream 9996 true scaffold_2: 25173298-25183293 Setaria italica
Seita.2G168900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 25178294-25183293 Setaria italica
Seita.2G168900 10.0kb upstream 10.0kb upstream 14996 true scaffold_2: 25163298-25178293 Setaria italica
Seita.2G168900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 25163298-25173297 Setaria italica
Seita.2G168900 10.0kb downstream 10.0kb downstream 14996 true scaffold_2: 25173298-25188293 Setaria italica
Seita.2G168900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 25178294-25188293 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188817 5267 Panicoideae View MSA
124572276 5269 Grass View MSA
122045611 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121349882 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.06        
cufflinks 9.592        
cufflinks 5.906        
cufflinks 5.382       Low
cufflinks 4.412       Low
cufflinks 10.351        
cufflinks 7.669        
cufflinks 6.59        
cufflinks 4.086       Low
cufflinks 9.448        
cufflinks 8.081        
cufflinks 27.613     High High
cufflinks 11.711        
cufflinks 7.805        
cufflinks 17.641     High High
cufflinks 8.336        
cufflinks 25.596     High High
cufflinks 11.084        
cufflinks 7.369        
cufflinks 24.205     High High

0 Strain