Gene : Seita.2G174800 S. italica v2.2
Defline:  (1 of 4) PTHR11119//PTHR11119:SF47 - XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER Genomic Order:  1748
Name:  ? Seita.2G174800 Secondary Identifier:  ? PAC:32722990
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G174800 0.5kb upstream 0.5kb upstream 5323 true scaffold_2: 26339432-26344754 Setaria italica
Seita.2G174800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 26344255-26344754 Setaria italica
Seita.2G174800 0.5kb downstream 0.5kb downstream 5323 true scaffold_2: 26338932-26344254 Setaria italica
Seita.2G174800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 26338932-26339431 Setaria italica
Seita.2G174800 1.0kb upstream 1.0kb upstream 5823 true scaffold_2: 26339432-26345254 Setaria italica
Seita.2G174800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 26344255-26345254 Setaria italica
Seita.2G174800 1.0kb downstream 1.0kb downstream 5823 true scaffold_2: 26338432-26344254 Setaria italica
Seita.2G174800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 26338432-26339431 Setaria italica
Seita.2G174800 2.0kb upstream 2.0kb upstream 6823 true scaffold_2: 26339432-26346254 Setaria italica
Seita.2G174800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 26344255-26346254 Setaria italica
Seita.2G174800 2.0kb downstream 2.0kb downstream 6823 true scaffold_2: 26337432-26344254 Setaria italica
Seita.2G174800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 26337432-26339431 Setaria italica
Seita.2G174800 5.0kb upstream 5.0kb upstream 9823 true scaffold_2: 26339432-26349254 Setaria italica
Seita.2G174800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 26344255-26349254 Setaria italica
Seita.2G174800 5.0kb downstream 5.0kb downstream 9823 true scaffold_2: 26334432-26344254 Setaria italica
Seita.2G174800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 26334432-26339431 Setaria italica
Seita.2G174800 10.0kb upstream 10.0kb upstream 14823 true scaffold_2: 26339432-26354254 Setaria italica
Seita.2G174800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 26344255-26354254 Setaria italica
Seita.2G174800 10.0kb downstream 10.0kb downstream 14823 true scaffold_2: 26329432-26344254 Setaria italica
Seita.2G174800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 26329432-26339431 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175318 5267 Panicoideae View MSA
124574322 5269 Grass View MSA
122044330 5273 Angiosperm View MSA
121348988 5274 Embryophyte View MSA
123428829 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.266       High
cufflinks 2.141        
cufflinks 0.581       Low
cufflinks 0.431       Low
cufflinks 0.437       Low
cufflinks 3.383        
cufflinks 2.296        
cufflinks 2.414        
cufflinks 1.432        
cufflinks 5.308        
cufflinks 6.202       High
cufflinks 5.043        
cufflinks 4.301        
cufflinks 0.591       Low
cufflinks 6.371       High
cufflinks 1.78        
cufflinks 5.88        
cufflinks 1.137        
cufflinks 0.273       Low
cufflinks 5.652        

0 Strain