Gene : Seita.2G177400 S. italica v2.2
Defline:  (1 of 2) PTHR12604:SF2 - X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 6 Genomic Order:  1774
Name:  ? Seita.2G177400 Secondary Identifier:  ? PAC:32721320
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G177400 0.5kb upstream 0.5kb upstream 9291 true scaffold_2: 26765069-26774359 Setaria italica
Seita.2G177400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 26765069-26765568 Setaria italica
Seita.2G177400 0.5kb downstream 0.5kb downstream 9291 true scaffold_2: 26765569-26774859 Setaria italica
Seita.2G177400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 26774360-26774859 Setaria italica
Seita.2G177400 1.0kb upstream 1.0kb upstream 9791 true scaffold_2: 26764569-26774359 Setaria italica
Seita.2G177400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 26764569-26765568 Setaria italica
Seita.2G177400 1.0kb downstream 1.0kb downstream 9791 true scaffold_2: 26765569-26775359 Setaria italica
Seita.2G177400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 26774360-26775359 Setaria italica
Seita.2G177400 2.0kb upstream 2.0kb upstream 10791 true scaffold_2: 26763569-26774359 Setaria italica
Seita.2G177400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 26763569-26765568 Setaria italica
Seita.2G177400 2.0kb downstream 2.0kb downstream 10791 true scaffold_2: 26765569-26776359 Setaria italica
Seita.2G177400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 26774360-26776359 Setaria italica
Seita.2G177400 5.0kb upstream 5.0kb upstream 13791 true scaffold_2: 26760569-26774359 Setaria italica
Seita.2G177400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 26760569-26765568 Setaria italica
Seita.2G177400 5.0kb downstream 5.0kb downstream 13791 true scaffold_2: 26765569-26779359 Setaria italica
Seita.2G177400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 26774360-26779359 Setaria italica
Seita.2G177400 10.0kb upstream 10.0kb upstream 18791 true scaffold_2: 26755569-26774359 Setaria italica
Seita.2G177400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 26755569-26765568 Setaria italica
Seita.2G177400 10.0kb downstream 10.0kb downstream 18791 true scaffold_2: 26765569-26784359 Setaria italica
Seita.2G177400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 26774360-26784359 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192321 5267 Panicoideae View MSA
124580278 5269 Grass View MSA
122048334 5273 Angiosperm View MSA
121348405 5274 Embryophyte View MSA
123427822 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.013        
cufflinks 2.377       High
cufflinks 1.301        
cufflinks 0.923       Low
cufflinks 1.079       Low
cufflinks 2.744       High
cufflinks 1.444        
cufflinks 2.059        
cufflinks 1.553        
cufflinks 1.635        
cufflinks 1.726        
cufflinks 2.071        
cufflinks 1.485        
cufflinks 1.231        
cufflinks 2.269        
cufflinks 1.547        
cufflinks 2.443       High
cufflinks 1.89        
cufflinks 0.789       Low
cufflinks 2.26        

0 Strain