Gene : Seita.2G177800 S. italica v2.2
Defline:  (1 of 17) KOG0087 - GTPase Rab11/YPT3, small G protein superfamily Genomic Order:  1778
Name:  ? Seita.2G177800 Secondary Identifier:  ? PAC:32721673
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G177800 0.5kb upstream 0.5kb upstream 3189 true scaffold_2: 26823423-26826611 Setaria italica
Seita.2G177800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 26826112-26826611 Setaria italica
Seita.2G177800 0.5kb downstream 0.5kb downstream 3189 true scaffold_2: 26822923-26826111 Setaria italica
Seita.2G177800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 26822923-26823422 Setaria italica
Seita.2G177800 1.0kb upstream 1.0kb upstream 3689 true scaffold_2: 26823423-26827111 Setaria italica
Seita.2G177800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 26826112-26827111 Setaria italica
Seita.2G177800 1.0kb downstream 1.0kb downstream 3689 true scaffold_2: 26822423-26826111 Setaria italica
Seita.2G177800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 26822423-26823422 Setaria italica
Seita.2G177800 2.0kb upstream 2.0kb upstream 4689 true scaffold_2: 26823423-26828111 Setaria italica
Seita.2G177800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 26826112-26828111 Setaria italica
Seita.2G177800 2.0kb downstream 2.0kb downstream 4689 true scaffold_2: 26821423-26826111 Setaria italica
Seita.2G177800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 26821423-26823422 Setaria italica
Seita.2G177800 5.0kb upstream 5.0kb upstream 7689 true scaffold_2: 26823423-26831111 Setaria italica
Seita.2G177800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 26826112-26831111 Setaria italica
Seita.2G177800 5.0kb downstream 5.0kb downstream 7689 true scaffold_2: 26818423-26826111 Setaria italica
Seita.2G177800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 26818423-26823422 Setaria italica
Seita.2G177800 10.0kb upstream 10.0kb upstream 12689 true scaffold_2: 26823423-26836111 Setaria italica
Seita.2G177800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 26826112-26836111 Setaria italica
Seita.2G177800 10.0kb downstream 10.0kb downstream 12689 true scaffold_2: 26813423-26826111 Setaria italica
Seita.2G177800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 26813423-26823422 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193937 5267 Panicoideae View MSA
124587924 5269 Grass View MSA
122042184 5273 Angiosperm View MSA
121351595 5274 Embryophyte View MSA
123426852 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.344        
cufflinks 4.255        
cufflinks 1.297       Low
cufflinks 1.45       Low
cufflinks 1.96       Low
cufflinks 3.874        
cufflinks 3.864        
cufflinks 3.034        
cufflinks 3.124        
cufflinks 4.942        
cufflinks 6.677       High
cufflinks 3.831        
cufflinks 4.762        
cufflinks 1.875       Low
cufflinks 4.964        
cufflinks 2.936        
cufflinks 6.313       High
cufflinks 2.717        
cufflinks 1.759       Low
cufflinks 6.11       High

0 Strain