Gene : Seita.2G180200 S. italica v2.2
Defline:  (1 of 2) 1.14.19.4 - Delta(8)-fatty-acid desaturase / SLD Genomic Order:  1802
Name:  ? Seita.2G180200 Secondary Identifier:  ? PAC:32722518
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7601 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G180200 0.5kb upstream 0.5kb upstream 2755 true scaffold_2: 27271793-27274547 Setaria italica
Seita.2G180200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 27271793-27272292 Setaria italica
Seita.2G180200 0.5kb downstream 0.5kb downstream 2755 true scaffold_2: 27272293-27275047 Setaria italica
Seita.2G180200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 27274548-27275047 Setaria italica
Seita.2G180200 1.0kb upstream 1.0kb upstream 3255 true scaffold_2: 27271293-27274547 Setaria italica
Seita.2G180200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 27271293-27272292 Setaria italica
Seita.2G180200 1.0kb downstream 1.0kb downstream 3255 true scaffold_2: 27272293-27275547 Setaria italica
Seita.2G180200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 27274548-27275547 Setaria italica
Seita.2G180200 2.0kb upstream 2.0kb upstream 4255 true scaffold_2: 27270293-27274547 Setaria italica
Seita.2G180200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 27270293-27272292 Setaria italica
Seita.2G180200 2.0kb downstream 2.0kb downstream 4255 true scaffold_2: 27272293-27276547 Setaria italica
Seita.2G180200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 27274548-27276547 Setaria italica
Seita.2G180200 5.0kb upstream 5.0kb upstream 7255 true scaffold_2: 27267293-27274547 Setaria italica
Seita.2G180200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 27267293-27272292 Setaria italica
Seita.2G180200 5.0kb downstream 5.0kb downstream 7255 true scaffold_2: 27272293-27279547 Setaria italica
Seita.2G180200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 27274548-27279547 Setaria italica
Seita.2G180200 10.0kb upstream 10.0kb upstream 12255 true scaffold_2: 27262293-27274547 Setaria italica
Seita.2G180200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 27262293-27272292 Setaria italica
Seita.2G180200 10.0kb downstream 10.0kb downstream 12255 true scaffold_2: 27272293-27284547 Setaria italica
Seita.2G180200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 27274548-27284547 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047499 5273 Angiosperm View MSA
122199895 5267 Panicoideae View MSA
124575823 5269 Grass View MSA
121347259 5274 Embryophyte View MSA
123427370 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.451     High  
cufflinks 40.958     High  
cufflinks 49.132     High  
cufflinks 38.898     High  
cufflinks 54.725     High  
cufflinks 51.345     High  
cufflinks 55.458     High  
cufflinks 61.021     High  
cufflinks 49.349     High  
cufflinks 53.154     High  
cufflinks 50.757     High  
cufflinks 22.348     High  
cufflinks 30.008     High  
cufflinks 21.205     High Low
cufflinks 40.022     High  
cufflinks 26.302     High  
cufflinks 50.057     High  
cufflinks 5.709       Low
cufflinks 37.711     High  
cufflinks 64.294     High  

0 Strain