Gene : Seita.2G180100 S. italica v2.2
Defline:  (1 of 2) 2.8.1.6//2.8.1.7 - Cysteine desulfurase / Cysteine desulfurylase Genomic Order:  1801
Name:  ? Seita.2G180100 Secondary Identifier:  ? PAC:32722717
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1021 Setaria italica pathologic  
Sitalica PWY0-1507 Setaria italica pathologic  
Sitalica PWY-6823 Setaria italica pathologic  
Sitalica PWY-7250 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G180100 0.5kb upstream 0.5kb upstream 4897 true scaffold_2: 27251709-27256605 Setaria italica
Seita.2G180100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 27256106-27256605 Setaria italica
Seita.2G180100 0.5kb downstream 0.5kb downstream 4897 true scaffold_2: 27251209-27256105 Setaria italica
Seita.2G180100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 27251209-27251708 Setaria italica
Seita.2G180100 1.0kb upstream 1.0kb upstream 5397 true scaffold_2: 27251709-27257105 Setaria italica
Seita.2G180100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 27256106-27257105 Setaria italica
Seita.2G180100 1.0kb downstream 1.0kb downstream 5397 true scaffold_2: 27250709-27256105 Setaria italica
Seita.2G180100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 27250709-27251708 Setaria italica
Seita.2G180100 2.0kb upstream 2.0kb upstream 6397 true scaffold_2: 27251709-27258105 Setaria italica
Seita.2G180100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 27256106-27258105 Setaria italica
Seita.2G180100 2.0kb downstream 2.0kb downstream 6397 true scaffold_2: 27249709-27256105 Setaria italica
Seita.2G180100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 27249709-27251708 Setaria italica
Seita.2G180100 5.0kb upstream 5.0kb upstream 9397 true scaffold_2: 27251709-27261105 Setaria italica
Seita.2G180100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 27256106-27261105 Setaria italica
Seita.2G180100 5.0kb downstream 5.0kb downstream 9397 true scaffold_2: 27246709-27256105 Setaria italica
Seita.2G180100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 27246709-27251708 Setaria italica
Seita.2G180100 10.0kb upstream 10.0kb upstream 14397 true scaffold_2: 27251709-27266105 Setaria italica
Seita.2G180100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 27256106-27266105 Setaria italica
Seita.2G180100 10.0kb downstream 10.0kb downstream 14397 true scaffold_2: 27241709-27256105 Setaria italica
Seita.2G180100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 27241709-27251708 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194160 5267 Panicoideae View MSA
124572398 5269 Grass View MSA
122047383 5273 Angiosperm View MSA
121345399 5274 Embryophyte View MSA
123425014 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.192        
cufflinks 2.942       Low
cufflinks 7.737       High
cufflinks 7.272       High
cufflinks 5.377        
cufflinks 3.068       Low
cufflinks 2.955       Low
cufflinks 4.539        
cufflinks 3.688        
cufflinks 4.505        
cufflinks 3.358        
cufflinks 5.022        
cufflinks 4.042        
cufflinks 5.72        
cufflinks 2.905       Low
cufflinks 4.538        
cufflinks 4.331        
cufflinks 10.087       High
cufflinks 5.068        
cufflinks 3.642        

0 Strain