Gene : Seita.2G178200 S. italica v2.2
Defline:  (1 of 1) PTHR11122:SF12 - ALDOSE 1-EPIMERASE FAMILY PROTEIN Genomic Order:  1782
Name:  ? Seita.2G178200 Secondary Identifier:  ? PAC:32722673
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G178200 0.5kb upstream 0.5kb upstream 4181 true scaffold_2: 26849652-26853832 Setaria italica
Seita.2G178200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 26853333-26853832 Setaria italica
Seita.2G178200 0.5kb downstream 0.5kb downstream 4181 true scaffold_2: 26849152-26853332 Setaria italica
Seita.2G178200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 26849152-26849651 Setaria italica
Seita.2G178200 1.0kb upstream 1.0kb upstream 4681 true scaffold_2: 26849652-26854332 Setaria italica
Seita.2G178200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 26853333-26854332 Setaria italica
Seita.2G178200 1.0kb downstream 1.0kb downstream 4681 true scaffold_2: 26848652-26853332 Setaria italica
Seita.2G178200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 26848652-26849651 Setaria italica
Seita.2G178200 2.0kb upstream 2.0kb upstream 5681 true scaffold_2: 26849652-26855332 Setaria italica
Seita.2G178200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 26853333-26855332 Setaria italica
Seita.2G178200 2.0kb downstream 2.0kb downstream 5681 true scaffold_2: 26847652-26853332 Setaria italica
Seita.2G178200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 26847652-26849651 Setaria italica
Seita.2G178200 5.0kb upstream 5.0kb upstream 8681 true scaffold_2: 26849652-26858332 Setaria italica
Seita.2G178200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 26853333-26858332 Setaria italica
Seita.2G178200 5.0kb downstream 5.0kb downstream 8681 true scaffold_2: 26844652-26853332 Setaria italica
Seita.2G178200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 26844652-26849651 Setaria italica
Seita.2G178200 10.0kb upstream 10.0kb upstream 13681 true scaffold_2: 26849652-26863332 Setaria italica
Seita.2G178200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 26853333-26863332 Setaria italica
Seita.2G178200 10.0kb downstream 10.0kb downstream 13681 true scaffold_2: 26839652-26853332 Setaria italica
Seita.2G178200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 26839652-26849651 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186407 5267 Panicoideae View MSA
124573599 5269 Grass View MSA
122047279 5273 Angiosperm View MSA
121346170 5274 Embryophyte View MSA
123425182 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.333       Low
cufflinks 11.904        
cufflinks 77.462     High High
cufflinks 122.007     High High
cufflinks 134.101     High High
cufflinks 11.51        
cufflinks 42.358     High  
cufflinks 56.983     High  
cufflinks 60.395     High  
cufflinks 3.601       Low
cufflinks 4.079       Low
cufflinks 10.277        
cufflinks 17.779     High  
cufflinks 34.685     High  
cufflinks 10.625        
cufflinks 24.254     High  
cufflinks 11.998        
cufflinks 3.806       Low
cufflinks 79.547     High High
cufflinks 18.939     High  

0 Strain