Gene : Seita.2G182700 S. italica v2.2
Defline:  (1 of 1) PTHR24319:SF26 - PROTEIN DHS-1 Genomic Order:  1827
Name:  ? Seita.2G182700 Secondary Identifier:  ? PAC:32720702
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G182700 0.5kb upstream 0.5kb upstream 3340 true scaffold_2: 27760980-27764319 Setaria italica
Seita.2G182700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 27763820-27764319 Setaria italica
Seita.2G182700 0.5kb downstream 0.5kb downstream 3340 true scaffold_2: 27760480-27763819 Setaria italica
Seita.2G182700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 27760480-27760979 Setaria italica
Seita.2G182700 1.0kb upstream 1.0kb upstream 3840 true scaffold_2: 27760980-27764819 Setaria italica
Seita.2G182700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 27763820-27764819 Setaria italica
Seita.2G182700 1.0kb downstream 1.0kb downstream 3840 true scaffold_2: 27759980-27763819 Setaria italica
Seita.2G182700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 27759980-27760979 Setaria italica
Seita.2G182700 2.0kb upstream 2.0kb upstream 4840 true scaffold_2: 27760980-27765819 Setaria italica
Seita.2G182700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 27763820-27765819 Setaria italica
Seita.2G182700 2.0kb downstream 2.0kb downstream 4840 true scaffold_2: 27758980-27763819 Setaria italica
Seita.2G182700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 27758980-27760979 Setaria italica
Seita.2G182700 5.0kb upstream 5.0kb upstream 7840 true scaffold_2: 27760980-27768819 Setaria italica
Seita.2G182700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 27763820-27768819 Setaria italica
Seita.2G182700 5.0kb downstream 5.0kb downstream 7840 true scaffold_2: 27755980-27763819 Setaria italica
Seita.2G182700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 27755980-27760979 Setaria italica
Seita.2G182700 10.0kb upstream 10.0kb upstream 12840 true scaffold_2: 27760980-27773819 Setaria italica
Seita.2G182700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 27763820-27773819 Setaria italica
Seita.2G182700 10.0kb downstream 10.0kb downstream 12840 true scaffold_2: 27750980-27763819 Setaria italica
Seita.2G182700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 27750980-27760979 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184979 5267 Panicoideae View MSA
124578829 5269 Grass View MSA
122045654 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121347612 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.322        
cufflinks 1.104        
cufflinks 0.827       Low
cufflinks 0.519       Low
cufflinks 0.602       Low
cufflinks 1.471        
cufflinks 1.349        
cufflinks 2.755        
cufflinks 1.976        
cufflinks 1.728        
cufflinks 1.694        
cufflinks 3.097       High
cufflinks 2.999       High
cufflinks 1.759        
cufflinks 2.122        
cufflinks 0.987        
cufflinks 4.261       High
cufflinks 1.441        
cufflinks 0.853       Low
cufflinks 2.615        

0 Strain