Gene : Seita.2G185600 S. italica v2.2
Defline:  (1 of 3) 3.4.11.2 - Membrane alanyl aminopeptidase / Peptidase E Genomic Order:  1856
Name:  ? Seita.2G185600 Secondary Identifier:  ? PAC:32718677
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6842 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G185600 0.5kb upstream 0.5kb upstream 13031 true scaffold_2: 28107398-28120428 Setaria italica
Seita.2G185600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28107398-28107897 Setaria italica
Seita.2G185600 0.5kb downstream 0.5kb downstream 13031 true scaffold_2: 28107898-28120928 Setaria italica
Seita.2G185600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28120429-28120928 Setaria italica
Seita.2G185600 1.0kb upstream 1.0kb upstream 13531 true scaffold_2: 28106898-28120428 Setaria italica
Seita.2G185600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28106898-28107897 Setaria italica
Seita.2G185600 1.0kb downstream 1.0kb downstream 13531 true scaffold_2: 28107898-28121428 Setaria italica
Seita.2G185600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28120429-28121428 Setaria italica
Seita.2G185600 2.0kb upstream 2.0kb upstream 14531 true scaffold_2: 28105898-28120428 Setaria italica
Seita.2G185600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28105898-28107897 Setaria italica
Seita.2G185600 2.0kb downstream 2.0kb downstream 14531 true scaffold_2: 28107898-28122428 Setaria italica
Seita.2G185600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28120429-28122428 Setaria italica
Seita.2G185600 5.0kb upstream 5.0kb upstream 17531 true scaffold_2: 28102898-28120428 Setaria italica
Seita.2G185600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28102898-28107897 Setaria italica
Seita.2G185600 5.0kb downstream 5.0kb downstream 17531 true scaffold_2: 28107898-28125428 Setaria italica
Seita.2G185600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28120429-28125428 Setaria italica
Seita.2G185600 10.0kb upstream 10.0kb upstream 22531 true scaffold_2: 28097898-28120428 Setaria italica
Seita.2G185600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28097898-28107897 Setaria italica
Seita.2G185600 10.0kb downstream 10.0kb downstream 22531 true scaffold_2: 28107898-28130428 Setaria italica
Seita.2G185600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28120429-28130428 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993156 5273 Angiosperm View MSA
122184745 5267 Panicoideae View MSA
124575448 5269 Grass View MSA
121263459 5274 Embryophyte View MSA
123428340 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.687        
cufflinks 1.267       Low
cufflinks 12.339     High High
cufflinks 13.042     High High
cufflinks 8.877       High
cufflinks 1.192       Low
cufflinks 5.649        
cufflinks 3.278        
cufflinks 4.212        
cufflinks 1.552        
cufflinks 2.662        
cufflinks 1.115       Low
cufflinks 2.477        
cufflinks 4.025        
cufflinks 1.159       Low
cufflinks 6.106        
cufflinks 1.345       Low
cufflinks 5.207        
cufflinks 5.449        
cufflinks 1.125       Low

0 Strain