Gene : Seita.2G186000 S. italica v2.2
Defline:  (1 of 1) PF10382 - Protein of unknown function (DUF2439) (DUF2439) Genomic Order:  1860
Name:  ? Seita.2G186000 Secondary Identifier:  ? PAC:32723179
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G186000 0.5kb upstream 0.5kb upstream 6738 true scaffold_2: 28163836-28170573 Setaria italica
Seita.2G186000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28163836-28164335 Setaria italica
Seita.2G186000 0.5kb downstream 0.5kb downstream 6738 true scaffold_2: 28164336-28171073 Setaria italica
Seita.2G186000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28170574-28171073 Setaria italica
Seita.2G186000 1.0kb upstream 1.0kb upstream 7238 true scaffold_2: 28163336-28170573 Setaria italica
Seita.2G186000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28163336-28164335 Setaria italica
Seita.2G186000 1.0kb downstream 1.0kb downstream 7238 true scaffold_2: 28164336-28171573 Setaria italica
Seita.2G186000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28170574-28171573 Setaria italica
Seita.2G186000 2.0kb upstream 2.0kb upstream 8238 true scaffold_2: 28162336-28170573 Setaria italica
Seita.2G186000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28162336-28164335 Setaria italica
Seita.2G186000 2.0kb downstream 2.0kb downstream 8238 true scaffold_2: 28164336-28172573 Setaria italica
Seita.2G186000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28170574-28172573 Setaria italica
Seita.2G186000 5.0kb upstream 5.0kb upstream 11238 true scaffold_2: 28159336-28170573 Setaria italica
Seita.2G186000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28159336-28164335 Setaria italica
Seita.2G186000 5.0kb downstream 5.0kb downstream 11238 true scaffold_2: 28164336-28175573 Setaria italica
Seita.2G186000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28170574-28175573 Setaria italica
Seita.2G186000 10.0kb upstream 10.0kb upstream 16238 true scaffold_2: 28154336-28170573 Setaria italica
Seita.2G186000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28154336-28164335 Setaria italica
Seita.2G186000 10.0kb downstream 10.0kb downstream 16238 true scaffold_2: 28164336-28180573 Setaria italica
Seita.2G186000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28170574-28180573 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027215 5273 Angiosperm View MSA
122188987 5267 Panicoideae View MSA
124580489 5269 Grass View MSA
121296903 5274 Embryophyte View MSA
123335011 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.18        
cufflinks 0.189        
cufflinks 0.026     Low Low
cufflinks 0.014     Low Low
cufflinks 0.016     Low Low
cufflinks 0.24        
cufflinks 0.105     Low  
cufflinks 0.329       High
cufflinks 0.14        
cufflinks 0.064     Low  
cufflinks 0.155        
cufflinks 0.174        
cufflinks 0.129     Low  
cufflinks 0.066     Low  
cufflinks 0.18        
cufflinks 0.089     Low  
cufflinks 0.291       High
cufflinks 0.17        
cufflinks 0.018     Low Low
cufflinks 0.257        

0 Strain