Gene : Seita.2G186700 S. italica v2.2
Defline:  (1 of 1) PTHR12072:SF4 - CWF19-LIKE PROTEIN 1 Genomic Order:  1867
Name:  ? Seita.2G186700 Secondary Identifier:  ? PAC:32722193
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G186700 0.5kb upstream 0.5kb upstream 4703 true scaffold_2: 28200872-28205574 Setaria italica
Seita.2G186700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28200872-28201371 Setaria italica
Seita.2G186700 0.5kb downstream 0.5kb downstream 4703 true scaffold_2: 28201372-28206074 Setaria italica
Seita.2G186700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28205575-28206074 Setaria italica
Seita.2G186700 1.0kb upstream 1.0kb upstream 5203 true scaffold_2: 28200372-28205574 Setaria italica
Seita.2G186700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28200372-28201371 Setaria italica
Seita.2G186700 1.0kb downstream 1.0kb downstream 5203 true scaffold_2: 28201372-28206574 Setaria italica
Seita.2G186700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28205575-28206574 Setaria italica
Seita.2G186700 2.0kb upstream 2.0kb upstream 6203 true scaffold_2: 28199372-28205574 Setaria italica
Seita.2G186700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28199372-28201371 Setaria italica
Seita.2G186700 2.0kb downstream 2.0kb downstream 6203 true scaffold_2: 28201372-28207574 Setaria italica
Seita.2G186700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28205575-28207574 Setaria italica
Seita.2G186700 5.0kb upstream 5.0kb upstream 9203 true scaffold_2: 28196372-28205574 Setaria italica
Seita.2G186700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28196372-28201371 Setaria italica
Seita.2G186700 5.0kb downstream 5.0kb downstream 9203 true scaffold_2: 28201372-28210574 Setaria italica
Seita.2G186700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28205575-28210574 Setaria italica
Seita.2G186700 10.0kb upstream 10.0kb upstream 14203 true scaffold_2: 28191372-28205574 Setaria italica
Seita.2G186700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28191372-28201371 Setaria italica
Seita.2G186700 10.0kb downstream 10.0kb downstream 14203 true scaffold_2: 28201372-28215574 Setaria italica
Seita.2G186700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28205575-28215574 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026236 5273 Angiosperm View MSA
122186659 5267 Panicoideae View MSA
124578526 5269 Grass View MSA
121344253 5274 Embryophyte View MSA
123426244 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.006        
cufflinks 5.309        
cufflinks 1.066       Low
cufflinks 0.534       Low
cufflinks 0.652       Low
cufflinks 5.487       High
cufflinks 3.019        
cufflinks 3.402        
cufflinks 2.994        
cufflinks 4.365        
cufflinks 3.662        
cufflinks 4.025        
cufflinks 2.826        
cufflinks 2.306        
cufflinks 4.319        
cufflinks 2.669        
cufflinks 4.5        
cufflinks 3.605        
cufflinks 0.782       Low
cufflinks 4.276        

0 Strain